Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 9.3e-136 486.9 247 100.0
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 3.0e-17 93.2 95 57.9
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 2.1e-15 87.0 95 55.8
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 1.1e-14 84.7 122 48.4
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 9.0e-14 81.6 101 53.5
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 1.2e-13 81.3 108 48.1
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 5.9e-13 79.0 102 49.0
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 7.6e-13 78.6 103 47.6
Cpa.g.sc15.25 Carica papaya HOM05D000003 ORTHO05D000004 1.0e-12 78.2 76 52.6
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 1.0e-12 78.2 115 43.5
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.0e-12 78.2 91 54.9
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 2.2e-12 77.0 113 43.4
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 2.2e-12 77.0 119 43.7
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 2.2e-12 77.0 83 54.2
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 5.0e-12 75.9 133 40.6
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 5.0e-12 75.9 77 63.6
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 8.4e-12 75.1 70 58.6
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 8.4e-12 75.1 114 46.5
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 8.4e-12 75.1 122 43.4
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 1.1e-11 74.7 108 44.4
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 2.5e-11 73.6 89 55.1
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 7.2e-11 72.0 116 44.8
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 7.2e-11 72.0 116 45.7
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 9.3e-11 71.6 84 50.0
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 9.3e-11 71.6 84 50.0
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 9.3e-11 71.6 117 45.3
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 1.2e-10 71.2 63 60.3
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 1.6e-10 70.9 84 50.0
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.6e-10 70.9 84 50.0
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.6e-10 70.9 84 50.0
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 1.6e-10 70.9 81 50.6
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 1.6e-10 70.9 91 48.4
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 1.6e-10 70.9 99 49.5
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 2.1e-10 70.5 98 46.9
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 2.7e-10 70.1 107 45.8
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 3.5e-10 69.7 84 48.8
Cpa.g.sc36.209 Carica papaya HOM05D000003 ORTHO05D000004 4.6e-10 69.3 65 53.8
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 6.1e-10 68.9 96 49.0
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 1.0e-09 68.2 130 43.8
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 2.3e-09 67.0 87 54.0
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 2.3e-09 67.0 98 46.9
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 3.0e-09 66.6 65 55.4
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 3.0e-09 66.6 65 55.4
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 6.7e-09 65.5 95 47.4
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 6.7e-09 65.5 114 42.1
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 6.7e-09 65.5 80 52.5
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 1.5e-08 64.3 83 45.8
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 1.9e-08 63.9 120 40.0
BraA07t30596Z Brassica rapa HOM05D007960 ORTHO05D010026 2.5e-08 63.5 62 54.8
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.5e-08 63.5 104 41.3
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.5e-08 63.5 97 46.4
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 4.3e-08 62.8 104 43.3
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 4.3e-08 62.8 104 43.3
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 4.3e-08 62.8 112 43.8
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 5.7e-08 62.4 109 45.0
Cpa.g.sc791.1 Carica papaya HOM05D000003 ORTHO05D000004 7.4e-08 62.0 65 47.7
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.7e-08 61.6 104 41.3
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 1.3e-07 61.2 112 40.2
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 2.8e-07 60.1 112 42.9
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 3.7e-07 59.7 80 48.8
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 6.3e-07 58.9 97 47.4
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 1.1e-06 58.2 101 39.6
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 1.1e-06 58.2 113 38.9
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-06 57.8 62 41.9
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 1.4e-06 57.8 109 41.3
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.4e-06 57.8 110 40.9
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 1.8e-06 57.4 107 38.3
TPR.G18100 Trifolium pratense HOM05D000003 ORTHO05D000004 1.8e-06 57.4 72 44.4
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 2.4e-06 57.0 102 42.2
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 5.3e-06 55.8 95 43.2
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 6.9e-06 55.5 66 51.5
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 6.9e-06 55.5 96 41.7
AUR62036925 Chenopodium quinoa HOM05D007960 ORTHO05D010026 9.0e-06 55.1 55 52.7


User provided reference genes

Program Settings