Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.68 Carica papaya HOM05D006989 ORTHO05D008787 6.8e-93 344.0 171 100.0
Duzib068G0613 Durio zibethinus HOM05D006989 ORTHO05D008787 9.8e-76 287.0 172 81.4
Hma1.2p1_0340F.1_g130020 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 9.8e-76 287.0 172 80.8
Atru.chr9.726 Acer truncatum HOM05D006989 ORTHO05D008787 1.3e-75 286.6 172 80.8
Hma1.2p1_0340F.1_g130010 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 1.3e-75 286.6 171 80.7
Lj4g0002441 Lotus japonicus HOM05D006989 ORTHO05D008787 1.3e-75 286.6 172 80.2
Ciclev10021171m.g Citrus clementina HOM05D006989 ORTHO05D008787 1.7e-75 286.2 172 79.7
Potri.012G058700 Populus trichocarpa HOM05D006989 ORTHO05D008787 2.2e-75 285.8 168 82.1
GSVIVG01008222001 Vitis vinifera HOM05D006989 ORTHO05D008787 2.2e-75 285.8 172 79.1
Lalb_Chr13g0302431 Lupinus albus HOM05D006989 ORTHO05D008787 4.9e-75 284.6 170 80.6
QL10p023271 Quercus lobata HOM05D006989 ORTHO05D008787 6.3e-75 284.3 171 78.9
MD14G1220500 Malus domestica HOM05D006989 ORTHO05D008787 1.1e-74 283.5 170 80.6
Sabra12G0041400 Salix brachista HOM05D006989 ORTHO05D008787 1.4e-74 283.1 169 80.5
Thecc.03G026700 Theobroma cacao HOM05D006989 ORTHO05D008787 1.4e-74 283.1 172 79.1
Cfa019838 Carpinus fangiana HOM05D006989 ORTHO05D008787 2.4e-74 282.3 172 79.7
Psat4g046600 Pisum sativum HOM05D006989 ORTHO05D008787 4.1e-74 281.6 172 79.7
TAR371G0245 Trochodendron aralioides HOM05D006989 ORTHO05D008787 4.1e-74 281.6 172 79.1
MBI10_g46799_MAGBIO Magnolia biondii HOM05D006989 ORTHO05D008787 5.4e-74 281.2 172 76.7
Dinv36891 Davidia involucrata HOM05D006989 ORTHO05D008787 7.0e-74 280.8 172 79.1
Haze_18586 Corylus avellana HOM05D006989 ORTHO05D008787 9.2e-74 280.4 172 79.1
TPR.G26751 Trifolium pratense HOM05D006989 ORTHO05D008787 9.2e-74 280.4 172 78.5
Gohir.D03G108800 Gossypium hirsutum HOM05D006989 ORTHO05D008787 1.2e-73 280.0 172 77.3
Manes.05G117800 Manihot esculenta HOM05D006989 ORTHO05D008787 1.2e-73 280.0 171 77.8
Medtr4g111720 Medicago truncatula HOM05D006989 ORTHO05D008787 3.5e-73 278.5 172 78.5
Prupe.5G215800 Prunus persica HOM05D006989 ORTHO05D008787 3.5e-73 278.5 170 78.2
FAN13G0084 Fragaria x ananassa HOM05D006989 ORTHO05D008787 4.5e-73 278.1 171 79.5
EL10Ac5g11238 Beta vulgaris HOM05D006989 ORTHO05D008787 5.9e-73 277.7 172 76.7
Eucgr.K02650 Eucalyptus grandis HOM05D006989 ORTHO05D008787 5.9e-73 277.7 171 79.5
Peaxi162Scf00015g00627 Petunia axillaris HOM05D006989 ORTHO05D008787 5.9e-73 277.7 172 77.9
vmacro17686 Vaccinium macrocarpon HOM05D006989 ORTHO05D008787 7.8e-73 277.3 172 77.9
Gorai.003G114900 Gossypium raimondii HOM05D006989 ORTHO05D008787 1.0e-72 276.9 172 76.7
Cc04_g07650 Coffea canephora HOM05D006989 ORTHO05D008787 1.3e-72 276.6 169 78.1
Gohir.A03G057400 Gossypium hirsutum HOM05D006989 ORTHO05D008787 1.3e-72 276.6 172 76.7
Lj9A432T70 Lonicera japonica HOM05D006989 ORTHO05D008787 1.3e-72 276.6 170 78.2
Phvul.003G178500 Phaseolus vulgaris HOM05D006989 ORTHO05D008787 1.7e-72 276.2 172 77.3
VMungo1215G1232 Vigna mungo HOM05D006989 ORTHO05D008787 3.9e-72 275.0 172 76.7
CSS0004213 Camellia sinensis var. sinensis HOM05D006989 ORTHO05D008787 5.0e-72 274.6 171 77.2
Glyma.05G014300 Glycine max HOM05D006989 ORTHO05D008787 5.0e-72 274.6 172 76.7
Aqoxy3G00372 Aquilegia oxysepala HOM05D006989 ORTHO05D008787 8.6e-72 273.9 171 76.6
Nitab4.5_0003716g0040 Nicotiana tabacum HOM05D006989 ORTHO05D008787 1.5e-71 273.1 172 76.2
FvH4_5g12840 Fragaria vesca HOM05D006989 ORTHO05D008787 1.9e-71 272.7 171 78.9
FAN08G2263 Fragaria x ananassa HOM05D006989 ORTHO05D008787 1.9e-71 272.7 171 77.8
FAN18G0391 Fragaria x ananassa HOM05D006989 ORTHO05D008787 1.9e-71 272.7 171 78.9
FAN18G3152 Fragaria x ananassa HOM05D006989 ORTHO05D008787 1.9e-71 272.7 171 78.9
Glyma.17G122500 Glycine max HOM05D006989 ORTHO05D008787 2.5e-71 272.3 172 76.2
Hund09990 Selenicereus undatus HOM05D006989 ORTHO05D008787 3.3e-71 271.9 172 75.6
arahy.Tifrunner.gnm1.ann1.YL5ALI Arachis hypogaea HOM05D006989 ORTHO05D008787 5.6e-71 271.2 170 75.9
Nitab4.5_0000410g0190 Nicotiana tabacum HOM05D006989 ORTHO05D008787 5.6e-71 271.2 172 75.6
CAN.G438.105 Capsicum annuum HOM05D006989 ORTHO05D008787 7.3e-71 270.8 172 76.7
CAN.G5608.1 Capsicum annuum HOM05D006989 ORTHO05D008787 7.3e-71 270.8 172 76.7
HanXRQChr16g0502051 Helianthus annuus HOM05D006989 ORTHO05D008787 7.3e-71 270.8 169 78.1
arahy.Tifrunner.gnm1.ann1.00I7KW Arachis hypogaea HOM05D006989 ORTHO05D008787 9.5e-71 270.4 170 75.3
AUR62036938 Chenopodium quinoa HOM05D006989 ORTHO05D008787 9.5e-71 270.4 172 76.2
CiPaw.16G083100 Carya illinoinensis HOM05D006989 ORTHO05D008787 2.1e-70 269.2 161 82.0
CANSAT80G0764 Cannabis sativa HOM05D006989 ORTHO05D008787 2.8e-70 268.9 172 75.6
PGR044G0394 Punica granatum HOM05D006989 ORTHO05D008787 4.7e-70 268.1 172 76.7
AUR62032178 Chenopodium quinoa HOM05D006989 ORTHO05D008787 6.1e-70 267.7 172 75.0
DCAR_011597 Daucus carota HOM05D006989 ORTHO05D008787 6.1e-70 267.7 172 75.0
PGSC0003DMG400005701 Solanum tuberosum HOM05D006989 ORTHO05D008787 6.1e-70 267.7 172 76.2
Sopen03g038720 Solanum pennellii HOM05D006989 ORTHO05D008787 1.4e-69 266.5 172 75.6
Sed0007811 Sechium edule HOM05D006989 ORTHO05D008787 2.3e-69 265.8 169 75.1
TWI60G0487 Tripterygium wilfordii HOM05D006989 ORTHO05D008787 2.3e-69 265.8 169 76.3
Lsat_1_v5_gn_4_112081 Lactuca sativa HOM05D006989 ORTHO05D008787 6.8e-69 264.2 169 75.1
Solyc03g119860.3 Solanum lycopersicum HOM05D006989 ORTHO05D008787 6.8e-69 264.2 172 75.0
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 8.9e-69 263.8 169 76.3
PSO017G5495 Papaver somniferum HOM05D006989 ORTHO05D008787 2.6e-68 262.3 172 72.7
ClCG04G011330 Citrullus lanatus HOM05D006989 ORTHO05D008787 3.4e-68 261.9 169 74.0
Sc04g0003800 Simmondsia chinensis HOM05D006989 ORTHO05D008787 4.4e-68 261.5 172 73.3
MELO3C002070.2 Cucumis melo HOM05D006989 ORTHO05D008787 5.8e-68 261.2 169 74.6
PSO478G0366 Papaver somniferum HOM05D006989 ORTHO05D008787 7.5e-68 260.8 172 72.1
Oeu027137.1 Olea europaea HOM05D006989 ORTHO05D008787 9.8e-68 260.4 162 77.8
unitig_0.g1066 Utricularia gibba HOM05D000749 ORTHO05D008787 9.8e-68 260.4 173 72.3
CsaV3_1G006440 Cucumis sativus L. HOM05D006989 ORTHO05D008787 3.7e-67 258.5 169 73.4
MSTRG.11318 Avicennia marina HOM05D006989 ORTHO05D008787 7.0e-66 254.2 173 72.3
Nn4g23684 Nelumbo nucifera HOM05D006989 ORTHO05D008787 7.8e-65 250.8 161 75.8
Thhalv10018882m.g Eutrema salsugineum HOM05D006989 ORTHO05D008787 2.6e-60 235.7 171 65.5
Aa31LG4G4380 Aethionema arabicum HOM05D006989 ORTHO05D008787 7.5e-60 234.2 171 65.5
CDE07G1569 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 1.3e-59 233.4 170 65.3
THA.LOC104808300 Tarenaya hassleriana HOM05D006989 ORTHO05D008787 6.4e-59 231.1 171 64.3
AT1G74070 Arabidopsis thaliana HOM05D006989 ORTHO05D008787 3.2e-58 228.8 173 64.7
BcaC03g15478 Brassica carinata HOM05D006989 ORTHO05D008787 1.2e-57 226.9 171 64.3
BolC2t09188H Brassica oleracea HOM05D006989 ORTHO05D008787 1.2e-57 226.9 171 64.3
Carub.0002s2087 Capsella rubella HOM05D006989 ORTHO05D008787 4.6e-57 224.9 173 64.2
C02p31570 Brassica napus HOM05D006989 ORTHO05D008787 1.3e-56 223.4 171 63.2
AL2G33970 Arabidopsis lyrata HOM05D006989 ORTHO05D008787 1.7e-56 223.0 173 63.6
A02p19070 Brassica napus HOM05D006989 ORTHO05D008787 3.0e-56 222.2 171 62.6
BraA02t06954Z Brassica rapa HOM05D006989 ORTHO05D008787 3.0e-56 222.2 171 62.6
BcaB05g24825 Brassica carinata HOM05D006989 ORTHO05D008787 3.9e-56 221.9 171 62.0
CARHR067230 Cardamine hirsuta HOM05D006989 ORTHO05D008787 8.6e-56 220.7 173 63.0
RcHm_v2.0_Chr7g0184401 Rosa chinensis HOM05D006989 ORTHO05D008787 5.6e-55 218.0 137 78.1
Sp5g29300 Schrenkiella parvula HOM05D006989 ORTHO05D008787 9.5e-55 217.2 173 59.5
HPP92_008287 Vanilla planifolia HOM05D006989 ORTHO05D008787 2.8e-54 215.7 168 58.3
SGA_v2.0_scaffold19G08801 Striga asiatica HOM05D003339 ORTHO05D003847 3.6e-54 215.3 172 65.1
Rhsim08G0138500 Rhododendron simsii HOM05D006989 ORTHO05D008787 1.4e-53 213.4 127 81.1
ATR0598G242 Amborella trichopoda HOM05D006989 ORTHO05D008787 3.4e-52 208.8 180 57.8
SEGI_21686 Sequoiadendron giganteum HOM05D006989 ORTHO05D008787 1.3e-51 206.8 167 59.3
Os01g0111100 Oryza sativa ssp. japonica HOM05D006989 ORTHO05D008787 2.9e-51 205.7 173 59.5
Migut.I00400 Erythranthe guttata HOM05D006989 ORTHO05D008787 9.2e-50 200.7 144 68.8
Zm00001eb334490 Zea mays HOM05D006989 ORTHO05D008787 4.3e-47 191.8 171 54.4
Ca_02529_v3 Cicer arietinum L. HOM05D006989 ORTHO05D008787 2.1e-46 189.5 126 73.8
CDE06G2777 Ceratophyllum demersum HOM05D006989 ORTHO05D008787 2.4e-45 186.0 145 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3224 Anthoceros agrestis HOM05D006989 ORTHO05D008787 1.2e-41 173.7 174 51.7
Pp3c16_25910 Physcomitrium patens HOM05D006989 ORTHO05D008787 1.2e-41 173.7 170 53.5
Mapoly0184s0020 Marchantia polymorpha HOM05D006989 ORTHO05D008787 3.5e-41 172.2 171 52.0
SMO358G0665 Selaginella moellendorffii HOM05D006989 ORTHO05D008787 1.4e-37 160.2 172 47.1
BcaB05g24826 Brassica carinata HOM05D006989 ORTHO05D008787 1.7e-35 153.3 171 50.3
QL02p096006 Quercus lobata HOM05D006989 ORTHO05D008787 8.7e-32 141.0 102 67.6
Cre03.g174750 Chlamydomonas reinhardtii HOM05D006989 ORTHO05D008787 7.6e-28 127.9 169 39.6
MCO04G083 Micromonas commoda HOM05D006989 ORTHO05D008787 2.8e-22 109.4 131 46.6
Actinidia25078 Actinidia chinensis HOM05D002902 ORTHO05D008465 2.6e-20 102.8 106 56.6
Oeu016157.1 Olea europaea HOM05D006989 ORTHO05D008787 3.0e-16 89.4 60 66.7
CBR_g48720 Chara braunii HOM05D006989 ORTHO05D008787 3.4e-12 75.9 116 38.8
PRCOL_00006954 Prasinoderma coloniale HOM05D006989 ORTHO05D008787 1.7e-11 73.6 108 38.0
Cpa.g.sc118.46 Carica papaya HOM05D006989 ORTHO05D008787 2.7e-09 66.2 32 93.8
CDE02G2211 Ceratophyllum demersum HOM05D007046 ORTHO05D008788 3.9e-08 62.4 95 36.8
Manes.14G138900 Manihot esculenta HOM05D007046 ORTHO05D008788 5.1e-08 62.0 149 30.9
Os08g0292600 Oryza sativa ssp. japonica HOM05D007046 ORTHO05D008788 6.7e-08 61.6 109 34.9
TAR625G0755 Trochodendron aralioides HOM05D007046 ORTHO05D008788 6.7e-08 61.6 95 37.9
MCO05G162 Micromonas commoda HOM05D007046 ORTHO05D008788 8.7e-08 61.2 85 37.6
Sc08g0005790 Simmondsia chinensis HOM05D007046 ORTHO05D008788 1.5e-07 60.5 95 38.9
MBI15_g31411_MAGBIO Magnolia biondii HOM05D007046 ORTHO05D008788 1.9e-07 60.1 126 32.5
ClCG02G017260 Citrullus lanatus HOM05D007046 ORTHO05D008788 2.5e-07 59.7 95 35.8
DCAR_008866 Daucus carota HOM05D007046 ORTHO05D008788 2.5e-07 59.7 97 33.0
Zm00001eb000740 Zea mays HOM05D007046 ORTHO05D008788 2.5e-07 59.7 109 34.9
Cfa020888 Carpinus fangiana HOM05D007046 ORTHO05D008788 3.3e-07 59.3 95 33.7
Rhsim03G0254300 Rhododendron simsii HOM05D007046 ORTHO05D008788 3.3e-07 59.3 95 36.8
ATR0629G031 Amborella trichopoda HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 36.8
AagrBONN_evm.TU.Sc2ySwM_117.689 Anthoceros agrestis HOM05D007046 ORTHO05D008788 5.7e-07 58.5 98 33.7
arahy.Tifrunner.gnm1.ann1.I71V0M Arachis hypogaea HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 34.7
arahy.Tifrunner.gnm1.ann1.LM8BDD Arachis hypogaea HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 34.7
Ca_03117_v3 Cicer arietinum L. HOM05D007046 ORTHO05D008788 5.7e-07 58.5 98 33.7
Haze_19316 Corylus avellana HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 33.7
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 34.7
Thhalv10004727m.g Eutrema salsugineum HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 35.8
Glyma.15G202300 Glycine max HOM05D007046 ORTHO05D008788 5.7e-07 58.5 95 34.7
AT5G35100 Arabidopsis thaliana HOM05D007046 ORTHO05D008788 7.4e-07 58.2 95 33.7
CSS0047212 Camellia sinensis var. sinensis HOM05D007046 ORTHO05D008788 7.4e-07 58.2 95 33.7
Carub.0007s3089 Capsella rubella HOM05D007046 ORTHO05D008788 7.4e-07 58.2 95 34.7
CBR_g31424 Chara braunii HOM05D007046 ORTHO05D008788 7.4e-07 58.2 74 43.2
SalBow1G5965 Salvia bowleyana HOM05D007046 ORTHO05D008788 7.4e-07 58.2 97 34.0
TPR.G33523 Trifolium pratense HOM05D007046 ORTHO05D008788 7.4e-07 58.2 111 30.6
Pp3c14_1150 Physcomitrium patens HOM05D007046 ORTHO05D008788 9.7e-07 57.8 98 33.7
CANSAT11G2023 Cannabis sativa HOM05D007046 ORTHO05D008788 1.3e-06 57.4 97 34.0
HanXRQChr03g0064041 Helianthus annuus HOM05D007046 ORTHO05D008788 1.3e-06 57.4 97 34.0
Nn8g39721 Nelumbo nucifera HOM05D007046 ORTHO05D008788 1.3e-06 57.4 95 36.8
Psat0s4009g0040 Pisum sativum HOM05D007046 ORTHO05D008788 1.3e-06 57.4 98 33.7
CARHR217170 Cardamine hirsuta HOM05D007046 ORTHO05D008788 1.6e-06 57.0 95 34.7
Ciclev10009009m.g Citrus clementina HOM05D007046 ORTHO05D008788 1.6e-06 57.0 95 34.7
Hma1.2p1_0949F.1_g240590 Hydrangea macrophylla HOM05D007046 ORTHO05D008788 1.6e-06 57.0 95 33.7
Medtr2g461260 Medicago truncatula HOM05D007046 ORTHO05D008788 1.6e-06 57.0 98 32.7
Nitab4.5_0005384g0010 Nicotiana tabacum HOM05D007046 ORTHO05D008788 1.6e-06 57.0 95 32.6
Aqoxy7G03530 Aquilegia oxysepala HOM05D007046 ORTHO05D008788 2.2e-06 56.6 95 32.6
AL7G43950 Arabidopsis lyrata HOM05D007046 ORTHO05D008788 2.2e-06 56.6 95 32.6
AUR62011254 Chenopodium quinoa HOM05D007046 ORTHO05D008788 2.2e-06 56.6 95 32.6
AUR62041451 Chenopodium quinoa HOM05D007046 ORTHO05D008788 2.2e-06 56.6 95 32.6
Cc06_g07400 Coffea canephora HOM05D007046 ORTHO05D008788 2.2e-06 56.6 95 31.6
Oeu052181.1 Olea europaea HOM05D007046 ORTHO05D008788 2.2e-06 56.6 97 36.1
MELO3C004443.2 Cucumis melo HOM05D007046 ORTHO05D008788 2.8e-06 56.2 95 33.7
Lsat_1_v5_gn_7_47900 Lactuca sativa HOM05D007046 ORTHO05D008788 2.8e-06 56.2 95 33.7
Lj9A708G24 Lonicera japonica HOM05D007046 ORTHO05D008788 2.8e-06 56.2 97 33.0
Aa31LG2G12340 Aethionema arabicum HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 33.7
BcaC07g37677 Brassica carinata HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 34.7
A08p09580 Brassica napus HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 34.7
BolC8t48049H Brassica oleracea HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 34.7
BraA08t32955Z Brassica rapa HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 34.7
Dinv42912 Davidia involucrata HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 33.7
Dinv43188 Davidia involucrata HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 33.7
ECA240G3524 Erigeron canadensis HOM05D007046 ORTHO05D008788 3.7e-06 55.8 97 34.0
VMungo1309G1390 Vigna mungo HOM05D007046 ORTHO05D008788 3.7e-06 55.8 95 34.7
EL10Ac8g18815 Beta vulgaris HOM05D007046 ORTHO05D008788 4.8e-06 55.5 95 34.7
MD15G1159700 Malus domestica HOM05D007046 ORTHO05D008788 4.8e-06 55.5 95 31.6
PSO210G0748 Papaver somniferum HOM05D007046 ORTHO05D008788 4.8e-06 55.5 95 32.6
Prupe.7G254600 Prunus persica HOM05D007046 ORTHO05D008788 4.8e-06 55.5 96 30.2
Sed0001104 Sechium edule HOM05D007046 ORTHO05D008788 4.8e-06 55.5 95 33.7
PRCOL_00003052 Prasinoderma coloniale HOM05D007046 ORTHO05D008788 6.3e-06 55.1 88 31.8
GSVIVG01012898001 Vitis vinifera HOM05D007046 ORTHO05D008788 6.3e-06 55.1 114 28.9
RcHm_v2.0_Chr2g0086651 Rosa chinensis HOM05D007046 ORTHO05D008788 8.2e-06 54.7 95 33.7
THA.LOC104815395 Tarenaya hassleriana HOM05D007046 ORTHO05D008788 8.2e-06 54.7 95 32.6


User provided reference genes

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