Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 0.0e+00 1309.7 657 100.0
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 2.9e-253 878.6 659 66.9
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 2.0e-249 865.9 661 66.6
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 2.4e-239 832.4 665 63.9
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.2e-237 825.9 660 63.9
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.1e-236 823.5 668 63.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 7.5e-233 810.8 662 63.0
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 7.0e-231 804.3 665 62.1
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.2e-230 803.5 659 62.5
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 2.8e-227 792.3 666 61.9
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 6.4e-224 781.2 652 62.0
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.2e-222 776.9 652 61.7
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.2e-222 776.9 641 62.4
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.1e-220 770.4 661 60.1
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 2.3e-218 762.7 664 59.2
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 4.1e-215 751.9 710 57.2
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 2.5e-212 742.7 693 56.9
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 5.6e-212 741.5 664 58.6
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 4.1e-207 725.3 662 57.9
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.8e-206 721.1 660 57.3
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 6.6e-205 718.0 664 57.7
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 1.9e-204 716.5 664 57.5
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 3.3e-204 715.7 665 57.6
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.1e-202 710.7 660 57.0
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 1.1e-202 710.7 683 55.5
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.4e-202 710.3 663 56.0
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.5e-201 706.8 665 55.3
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 1.7e-200 703.4 665 57.1
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.4e-199 700.3 662 55.0
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 2.7e-198 696.0 663 55.2
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 6.0e-198 694.9 665 56.7
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 7.8e-198 694.5 669 56.8
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.3e-197 693.7 664 56.3
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 8.6e-197 691.0 663 55.1
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.9e-196 689.9 667 56.4
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.2e-195 684.9 649 54.4
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.1e-194 682.6 662 55.1
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 5.2e-194 681.8 663 55.5
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 4.4e-193 678.7 663 53.7
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 5.8e-193 678.3 663 53.8
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.9e-192 676.0 663 53.5
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 3.8e-192 675.6 662 54.2
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 5.4e-191 671.8 590 59.8
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.0e-189 667.5 662 53.6
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.0e-189 667.5 654 54.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 3.0e-189 666.0 646 53.9
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 2.4e-186 656.4 673 54.1
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 9.0e-186 654.4 752 49.5
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 9.9e-185 651.0 668 53.3
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.8e-184 649.0 663 52.3
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 6.4e-184 648.3 781 48.7
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 8.4e-184 647.9 651 52.4
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 2.4e-183 646.4 600 56.0
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.2e-183 646.0 660 52.7
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 9.3e-183 644.4 658 54.1
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.8e-181 640.2 666 53.0
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 6.7e-181 638.3 597 55.1
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.9e-180 636.7 535 62.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 6.2e-179 631.7 670 51.5
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.4e-178 629.8 595 55.6
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.9e-176 622.9 682 50.4
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.3e-173 613.2 674 50.1
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.6e-171 607.1 592 54.7
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.1e-170 604.4 489 62.6
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.8e-170 603.6 497 62.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 3.1e-170 602.8 663 50.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 2.9e-168 596.3 662 49.4
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 2.1e-166 590.1 604 53.3
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.8e-165 587.0 471 63.7
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.8e-165 587.0 420 68.8
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.6e-163 580.5 659 50.2
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.8e-157 560.5 563 52.9
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 6.9e-154 548.5 460 62.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 7.7e-153 545.0 672 47.6
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 5.5e-151 538.9 514 54.5
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.7e-142 510.0 719 43.7
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.5e-137 493.0 596 46.8
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 4.2e-135 486.1 673 44.7
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 3.6e-134 483.0 701 42.7
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.5e-132 477.6 685 42.8
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.8e-131 473.4 705 42.6
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 3.8e-128 463.0 720 41.1
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 3.4e-124 449.9 485 49.5
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 2.4e-114 417.2 809 37.0
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.0e-112 409.5 684 38.7
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 2.0e-105 387.5 661 39.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.3e-103 379.8 511 43.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 7.3e-103 379.0 511 43.2
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 2.5e-95 354.0 379 53.0
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.3e-95 352.4 712 35.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.3e-91 339.0 448 42.2
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 7.1e-90 335.9 262 64.1
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.5e-87 327.4 478 42.7
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 7.6e-76 289.3 258 56.6
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.3e-72 278.5 258 54.3
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.3e-67 261.9 492 34.6
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 4.6e-57 226.9 392 39.0
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 5.6e-55 219.9 376 40.2
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-50 205.7 196 56.1
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 7.1e-50 203.0 397 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.6e-41 175.3 247 39.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.9e-40 170.6 169 53.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 3.3e-39 167.5 206 47.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.2e-38 164.9 171 50.9
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 8.5e-35 152.9 197 47.7
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-33 148.3 117 62.4
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 4.4e-31 140.6 133 57.9
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.4e-31 139.8 486 29.0
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 2.7e-25 121.3 168 44.6
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 7.4e-23 113.2 153 51.6
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.7e-19 102.1 520 23.5
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.9e-19 101.3 157 38.2
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.8e-16 92.0 99 44.4
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 8.5e-11 73.2 96 35.4
SEGI_40191 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.3e-06 56.6 46 60.9


User provided reference genes

Program Settings