Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.157 Carica papaya HOM05D006828 ORTHO05D008312 1.6e-103 379.4 189 100.0
RcHm_v2.0_Chr5g0027031 Rosa chinensis HOM05D006828 ORTHO05D008312 1.0e-70 270.4 173 75.7
Atru.chr2.1852 Acer truncatum HOM05D006828 ORTHO05D008312 4.0e-70 268.5 172 76.2
Potri.001G438500 Populus trichocarpa HOM05D006828 ORTHO05D008312 4.0e-70 268.5 175 73.1
FvH4_3g16060 Fragaria vesca HOM05D006828 ORTHO05D008312 1.5e-69 266.5 173 75.1
FAN21G2990 Fragaria x ananassa HOM05D006828 ORTHO05D008312 1.5e-69 266.5 173 75.1
Prupe.4G143800 Prunus persica HOM05D006828 ORTHO05D008312 2.0e-69 266.2 175 73.1
MD05G1215100 Malus domestica HOM05D006828 ORTHO05D008312 2.6e-69 265.8 175 74.3
Sp1g41610 Schrenkiella parvula HOM05D006828 ORTHO05D008312 1.4e-67 260.0 175 71.4
Medtr2g064620 Medicago truncatula HOM05D006828 ORTHO05D008312 1.9e-67 259.6 176 74.4
BcaC08g44230 Brassica carinata HOM05D006828 ORTHO05D008312 3.2e-67 258.8 175 71.4
A05p17190 Brassica napus HOM05D006828 ORTHO05D008312 3.2e-67 258.8 175 71.4
CARHR045730 Cardamine hirsuta HOM05D006828 ORTHO05D008312 3.2e-67 258.8 175 71.4
AL1G64240 Arabidopsis lyrata HOM05D006828 ORTHO05D008312 5.4e-67 258.1 175 70.9
AT1G56000 Arabidopsis thaliana HOM05D006828 ORTHO05D008312 5.4e-67 258.1 175 70.9
BraA05t20621Z Brassica rapa HOM05D006828 ORTHO05D008312 5.4e-67 258.1 175 71.4
BcaB02g10788 Brassica carinata HOM05D006828 ORTHO05D008312 7.0e-67 257.7 175 72.0
C06p16330 Brassica napus HOM05D006828 ORTHO05D008312 7.0e-67 257.7 175 70.9
BolC6t36833H Brassica oleracea HOM05D006828 ORTHO05D008312 7.0e-67 257.7 175 70.9
Carub.0001s4459 Capsella rubella HOM05D006828 ORTHO05D008312 7.0e-67 257.7 175 71.4
Sabra16G0296600 Salix brachista HOM05D006828 ORTHO05D008312 9.2e-67 257.3 179 70.9
Manes.03G083000 Manihot esculenta HOM05D006828 ORTHO05D008312 1.6e-66 256.5 175 70.3
CSS0004598 Camellia sinensis var. sinensis HOM05D006828 ORTHO05D008312 2.7e-66 255.8 175 71.4
TPR.G10335 Trifolium pratense HOM05D006828 ORTHO05D008312 2.7e-66 255.8 175 72.6
GSVIVG01020458001 Vitis vinifera HOM05D006828 ORTHO05D008312 2.7e-66 255.8 175 69.7
Lj3g0018431 Lotus japonicus HOM05D006828 ORTHO05D008312 3.5e-66 255.4 175 71.4
Aa31LG10G200 Aethionema arabicum HOM05D006828 ORTHO05D008312 4.6e-66 255.0 175 70.3
Duzib187G1012 Durio zibethinus HOM05D006828 ORTHO05D008312 4.6e-66 255.0 175 72.6
Sed0017518 Sechium edule HOM05D006828 ORTHO05D008312 6.0e-66 254.6 175 70.9
TAR626G1868 Trochodendron aralioides HOM05D006828 ORTHO05D008312 1.3e-65 253.4 175 68.6
Lalb_Chr25g0285201 Lupinus albus HOM05D006828 ORTHO05D008312 1.7e-65 253.1 175 69.7
FAN16G1914 Fragaria x ananassa HOM05D006828 ORTHO05D008312 3.9e-65 251.9 198 65.2
AL1G64100 Arabidopsis lyrata HOM05D006828 ORTHO05D008312 6.6e-65 251.1 175 70.3
Thhalv10011583m.g Eutrema salsugineum HOM05D006828 ORTHO05D008312 1.1e-64 250.4 175 69.7
CiPaw.11G067200 Carya illinoinensis HOM05D006828 ORTHO05D008312 1.5e-64 250.0 167 72.5
COL.COLO4_07047 Corchorus olitorius HOM05D006828 ORTHO05D008312 1.5e-64 250.0 169 72.2
THA.LOC104815709 Tarenaya hassleriana HOM05D006828 ORTHO05D008312 1.5e-64 250.0 175 71.4
Thecc.07G157000 Theobroma cacao HOM05D006828 ORTHO05D008312 3.3e-64 248.8 174 70.7
Cfa019441 Carpinus fangiana HOM05D006828 ORTHO05D008312 5.6e-64 248.1 171 70.8
CsaV3_4G007610 Cucumis sativus L. HOM05D006828 ORTHO05D008312 7.3e-64 247.7 175 69.7
Eucgr.F03187 Eucalyptus grandis HOM05D006828 ORTHO05D008312 7.3e-64 247.7 175 68.6
Oeu002810.1 Olea europaea HOM05D006828 ORTHO05D008312 7.3e-64 247.7 188 66.5
CANSAT56G3493 Cannabis sativa HOM05D006828 ORTHO05D008312 1.6e-63 246.5 178 70.2
ClCG07G010690 Citrullus lanatus HOM05D006828 ORTHO05D008312 1.6e-63 246.5 175 68.0
PGR031G1593 Punica granatum HOM05D006828 ORTHO05D008312 2.1e-63 246.1 177 68.9
Ciclev10020659m.g Citrus clementina HOM05D006828 ORTHO05D008312 8.0e-63 244.2 177 70.1
DCAR_019933 Daucus carota HOM05D006828 ORTHO05D008312 1.4e-62 243.4 175 69.1
arahy.Tifrunner.gnm1.ann1.CQPG2W Arachis hypogaea HOM05D006828 ORTHO05D008312 1.8e-62 243.0 175 66.9
MSTRG.14534 Avicennia marina HOM05D006828 ORTHO05D008312 1.8e-62 243.0 167 67.7
Nn7g37698 Nelumbo nucifera HOM05D006828 ORTHO05D008312 1.8e-62 243.0 173 67.1
Psat1g002280 Pisum sativum HOM05D006828 ORTHO05D008312 1.8e-62 243.0 170 70.6
vmacro11651 Vaccinium macrocarpon HOM05D006828 ORTHO05D008312 2.3e-62 242.7 175 69.1
Glyma.08G173600 Glycine max HOM05D006828 ORTHO05D008312 4.0e-62 241.9 175 69.1
Lj8C186T3 Lonicera japonica HOM05D006828 ORTHO05D008312 4.0e-62 241.9 173 67.6
VMungo1080G0718 Vigna mungo HOM05D006828 ORTHO05D008312 4.0e-62 241.9 175 71.4
arahy.Tifrunner.gnm1.ann1.BUZ5UW Arachis hypogaea HOM05D006828 ORTHO05D008312 5.2e-62 241.5 175 66.3
Hma1.2p1_0321F.1_g124490 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 5.2e-62 241.5 171 67.8
Gohir.D13G157900 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.5e-61 240.0 174 69.0
Lsat_1_v5_gn_9_88160 Lactuca sativa HOM05D006828 ORTHO05D008312 2.6e-61 239.2 173 66.5
Phvul.005G055100 Phaseolus vulgaris HOM05D006828 ORTHO05D008312 2.6e-61 239.2 175 69.1
MELO3C016180.2 Cucumis melo HOM05D006828 ORTHO05D008312 4.4e-61 238.4 192 64.6
SGA_v2.0_scaffold49G18167 Striga asiatica HOM05D006828 ORTHO05D008312 4.4e-61 238.4 173 66.5
Gorai.013G178600 Gossypium raimondii HOM05D006828 ORTHO05D008312 5.8e-61 238.0 175 68.6
Sopen10g001590 Solanum pennellii HOM05D006828 ORTHO05D008312 7.5e-61 237.7 173 67.6
PGSC0003DMG400011238 Solanum tuberosum HOM05D006828 ORTHO05D008312 2.9e-60 235.7 173 67.1
Solyc10g005620.3 Solanum lycopersicum HOM05D006828 ORTHO05D008312 3.7e-60 235.3 173 67.1
Gohir.A13G153300 Gossypium hirsutum HOM05D006828 ORTHO05D008312 6.4e-60 234.6 175 67.4
HanXRQChr03g0076671 Helianthus annuus HOM05D006828 ORTHO05D008312 1.9e-59 233.0 167 66.5
Cc05_g15920 Coffea canephora HOM05D006828 ORTHO05D008312 4.1e-59 231.9 168 64.9
Ca_03705_v3 Cicer arietinum L. HOM05D006828 ORTHO05D008312 7.0e-59 231.1 176 68.8
Migut.H01701 Erythranthe guttata HOM05D006828 ORTHO05D008312 1.2e-58 230.3 172 62.8
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 4.6e-58 228.4 161 68.9
CAN.G492.67 Capsicum annuum HOM05D006828 ORTHO05D008312 6.0e-58 228.0 173 66.5
ECA240G4146 Erigeron canadensis HOM05D006828 ORTHO05D008312 6.0e-58 228.0 175 65.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.3e-57 226.9 155 68.4
Aqoxy4G00446 Aquilegia oxysepala HOM05D006828 ORTHO05D008312 1.7e-57 226.5 176 61.9
Sc16g0003470 Simmondsia chinensis HOM05D006828 ORTHO05D008312 6.6e-57 224.6 173 64.2
Peaxi162Scf00039g00619 Petunia axillaris HOM05D006828 ORTHO05D008312 8.6e-57 224.2 173 63.6
PSO675G1962 Papaver somniferum HOM05D006828 ORTHO05D008312 1.1e-56 223.8 164 65.9
unitig_0.g977 Utricularia gibba HOM05D006828 ORTHO05D008312 1.1e-56 223.8 173 61.3
CDE02G2722 Ceratophyllum demersum HOM05D006828 ORTHO05D008312 2.5e-56 222.6 178 64.0
Nitab4.5_0000611g0200 Nicotiana tabacum HOM05D006828 ORTHO05D008312 9.5e-56 220.7 208 57.2
PSO675G1546 Papaver somniferum HOM05D006828 ORTHO05D008312 9.5e-56 220.7 164 65.2
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 1.6e-55 219.9 171 63.2
AUR62020181 Chenopodium quinoa HOM05D006828 ORTHO05D008312 1.6e-55 219.9 175 63.4
Aqoxy4G00445 Aquilegia oxysepala HOM05D006828 ORTHO05D008312 1.2e-53 213.8 183 56.3
SEGI_25857 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 6.4e-52 208.0 174 58.6
Ah.06g187350 Amaranthus hybridus HOM05D006828 ORTHO05D008312 1.4e-51 206.8 170 61.8
Os03g0784000 Oryza sativa ssp. japonica HOM05D006828 ORTHO05D008312 1.4e-51 206.8 175 56.0
EL10Ac4g08543 Beta vulgaris HOM05D006828 ORTHO05D008312 6.0e-50 201.4 173 60.1
Zm00001eb059780 Zea mays HOM05D006828 ORTHO05D008312 2.3e-49 199.5 174 54.6
SEGI_20609 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 1.2e-47 193.7 187 53.5
SEGI_01263 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 4.0e-46 188.7 155 59.4
Haze_08523 Corylus avellana HOM05D006828 ORTHO05D008312 1.5e-45 186.8 276 41.7
AT1G55980 Arabidopsis thaliana HOM05D006828 ORTHO05D008312 1.7e-41 173.3 118 68.6
Pp3c5_21370 Physcomitrium patens HOM05D006828 ORTHO05D008312 4.7e-39 165.2 169 47.9
Mapoly0153s0014 Marchantia polymorpha HOM05D006828 ORTHO05D008312 3.1e-38 162.5 171 48.0
AagrBONN_evm.TU.Sc2ySwM_362.372 Anthoceros agrestis HOM05D006828 ORTHO05D008312 6.9e-38 161.4 157 54.8
Haze_08521 Corylus avellana HOM05D006828 ORTHO05D008312 1.9e-35 153.3 118 64.4
AUR62042838 Chenopodium quinoa HOM05D006828 ORTHO05D008312 1.3e-31 140.6 175 46.9
CBR_g61470 Chara braunii HOM05D006828 ORTHO05D008312 1.1e-27 127.5 176 41.5
Hma1.2p1_0275F.1_g110560 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 2.7e-26 122.9 88 64.8
MD10G1198200 Malus domestica HOM05D006828 ORTHO05D008312 1.5e-21 107.1 150 43.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-17 94.4 59 74.6
Aqoxy4G00450 Aquilegia oxysepala HOM05D000022 ORTHO05D008312 4.9e-12 75.5 176 36.4
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 4.6e-10 68.9 173 26.6
Sc06g0003780 Simmondsia chinensis HOM05D005123 ORTHO05D006532 7.9e-10 68.2 174 28.2
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 1.8e-09 67.0 173 26.0
Aa31LG5G15060 Aethionema arabicum HOM05D005123 ORTHO05D006532 3.0e-09 66.2 178 26.4
AL3G14690 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 3.0e-09 66.2 173 26.6
Carub.0003s0381 Capsella rubella HOM05D005123 ORTHO05D006532 3.0e-09 66.2 173 26.6
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 3.0e-09 66.2 181 26.5
BcaB04g19310 Brassica carinata HOM05D005123 ORTHO05D006532 5.1e-09 65.5 173 26.6
Sp3g03490 Schrenkiella parvula HOM05D005123 ORTHO05D006532 5.1e-09 65.5 173 26.0
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 6.7e-09 65.1 171 24.6
BcaC01g04358 Brassica carinata HOM05D005123 ORTHO05D006532 6.7e-09 65.1 173 26.6
A03p33760 Brassica napus HOM05D005123 ORTHO05D006532 6.7e-09 65.1 173 26.6
C03p41060 Brassica napus HOM05D005123 ORTHO05D006532 6.7e-09 65.1 173 26.6
BolC3t16395H Brassica oleracea HOM05D005123 ORTHO05D006532 6.7e-09 65.1 173 26.6
BraA03t12549Z Brassica rapa HOM05D005123 ORTHO05D006532 6.7e-09 65.1 173 26.6
AT3G04650 Arabidopsis thaliana HOM05D005123 ORTHO05D006532 1.1e-08 64.3 174 27.0
EL10Ac4g09082 Beta vulgaris HOM05D005123 ORTHO05D006532 1.1e-08 64.3 171 25.7
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 1.1e-08 64.3 181 26.5
CARHR078850 Cardamine hirsuta HOM05D005123 ORTHO05D006532 1.5e-08 63.9 173 26.0
Thhalv10020605m.g Eutrema salsugineum HOM05D005123 ORTHO05D006532 1.9e-08 63.5 173 26.6
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 1.9e-08 63.5 182 28.6
Hund06950 Selenicereus undatus HOM05D005123 ORTHO05D006532 1.9e-08 63.5 173 26.0
Cre05.g245150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D008312 3.3e-08 62.8 181 29.3
MBI11_g20622_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 3.3e-08 62.8 186 25.8
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 3.3e-08 62.8 181 28.7
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 3.3e-08 62.8 185 27.0
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 4.3e-08 62.4 173 27.2
SalBow4G1942 Salvia bowleyana HOM05D005123 ORTHO05D006532 4.3e-08 62.4 176 29.0
Nn1g02615 Nelumbo nucifera HOM05D005123 ORTHO05D006532 5.7e-08 62.0 184 29.3
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 7.4e-08 61.6 178 26.4
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 9.7e-08 61.2 176 27.3
unitig_0.g2303 Utricularia gibba HOM05D005123 ORTHO05D006532 9.7e-08 61.2 181 26.5
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 1.3e-07 60.8 178 25.8
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 1.3e-07 60.8 181 28.2
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 1.3e-07 60.8 173 26.6
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 1.6e-07 60.5 177 23.7
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 1.6e-07 60.5 176 26.7
Oeu038460.1 Olea europaea HOM05D005123 ORTHO05D006532 1.6e-07 60.5 175 26.3
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 1.6e-07 60.5 178 25.3
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 1.6e-07 60.5 179 24.6
Aqoxy5G00319 Aquilegia oxysepala HOM05D005123 ORTHO05D006532 2.2e-07 60.1 186 25.3
AUR62001056 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.2e-07 60.1 173 26.0
Nitab4.5_0002247g0060 Nicotiana tabacum HOM05D005123 ORTHO05D006532 2.2e-07 60.1 166 26.5
AUR62004896 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.8e-07 59.7 173 26.0
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 2.8e-07 59.7 180 23.9
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 2.8e-07 59.7 180 26.1
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 2.8e-07 59.7 180 26.1
MSTRG.5089 Avicennia marina HOM05D005123 ORTHO05D006532 3.7e-07 59.3 183 27.3
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 4.8e-07 58.9 161 26.7
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 4.8e-07 58.9 181 26.5
Manes.08G136400 Manihot esculenta HOM05D005123 ORTHO05D006532 4.8e-07 58.9 179 25.1
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 4.8e-07 58.9 180 25.6
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 4.8e-07 58.9 181 24.9
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 6.3e-07 58.5 178 27.0
Sed0022916 Sechium edule HOM05D005123 ORTHO05D006532 6.3e-07 58.5 177 24.9
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 1.1e-06 57.8 183 24.6
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 1.4e-06 57.4 175 26.3
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 1.8e-06 57.0 177 24.9
HanXRQChr09g0259781 Helianthus annuus HOM05D005123 ORTHO05D006532 2.4e-06 56.6 176 23.9
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 3.1e-06 56.2 178 24.2
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 3.1e-06 56.2 180 26.1
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 5.3e-06 55.5 178 25.3
DCAR_006646 Daucus carota HOM05D005123 ORTHO05D006532 5.3e-06 55.5 178 26.4
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 5.3e-06 55.5 168 25.0
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 5.3e-06 55.5 176 23.9
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 5.3e-06 55.5 180 25.6
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 6.9e-06 55.1 181 25.4
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 6.9e-06 55.1 180 25.6
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 9.0e-06 54.7 179 25.7
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 9.0e-06 54.7 179 24.6
SMO367G1262 Selaginella moellendorffii HOM05D005123 ORTHO05D006532 9.0e-06 54.7 175 27.4


User provided reference genes

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