Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.4e-57 226.1 120 100.0
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 9.8e-14 80.5 59 78.0
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.8e-13 79.0 95 51.6
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.7e-13 78.6 60 76.7
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.1e-12 77.0 59 67.8
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.8e-12 76.3 59 69.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-12 76.3 61 72.1
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.8e-12 76.3 66 68.2
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.8e-12 76.3 62 71.0
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 3.1e-12 75.5 59 71.2
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 5.4e-12 74.7 59 71.2
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 5.4e-12 74.7 61 72.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 5.4e-12 74.7 61 72.1
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 7.0e-12 74.3 60 75.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.1e-12 73.9 59 72.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.6e-11 73.2 60 73.3
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.6e-11 73.2 59 69.5
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.0e-11 72.8 61 68.9
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.7e-11 72.4 59 67.8
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.7e-11 72.4 59 67.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.9e-11 71.2 60 71.7
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.9e-11 71.2 60 68.3
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 5.9e-11 71.2 59 66.1
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 7.7e-11 70.9 60 70.0
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.3e-10 70.1 60 68.3
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.3e-10 70.1 61 68.9
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.7e-10 69.7 59 69.5
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.7e-10 69.7 64 65.6
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 2.3e-10 69.3 59 69.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.3e-10 69.3 59 69.5
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.8e-10 68.6 60 63.3
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 5.0e-10 68.2 59 67.8
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.0e-10 68.2 59 62.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 5.0e-10 68.2 63 66.7
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 6.6e-10 67.8 59 62.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 8.6e-10 67.4 61 65.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-09 67.0 60 61.7
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 1.5e-09 66.6 59 61.0
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.9e-09 66.2 64 60.9
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.5e-09 65.9 60 61.7
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.2e-09 65.1 60 68.3
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.2e-09 65.1 59 59.3
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 5.5e-09 64.7 59 64.4
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 7.2e-09 64.3 59 61.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 9.5e-09 63.9 59 62.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.2e-08 63.5 59 62.7
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.2e-08 63.5 62 62.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.2e-08 63.5 59 67.8
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.2e-08 63.5 60 66.7
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.2e-08 63.5 60 66.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-08 63.5 59 67.8
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.2e-08 63.5 60 66.7
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.6e-08 63.2 59 59.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.6e-08 63.2 60 66.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.6e-08 63.2 55 65.5
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.6e-08 63.2 58 60.3
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 2.1e-08 62.8 59 62.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.8e-08 62.4 59 57.6
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.8e-08 62.4 59 62.7
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.8e-08 62.4 63 61.9
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.6e-08 62.0 60 61.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 3.6e-08 62.0 60 61.7
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 6.1e-08 61.2 60 61.7
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 6.1e-08 61.2 60 61.7
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.0e-08 60.8 59 55.9
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.0e-08 60.8 61 57.4
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.0e-07 60.5 59 61.0
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.0e-07 60.5 59 62.7
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.0e-07 60.5 59 59.3
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.4e-07 60.1 59 61.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.3e-07 59.3 61 62.3
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-07 59.3 53 60.4
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.3e-07 59.3 59 64.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.3e-07 59.3 59 66.1
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.0e-07 58.9 56 57.1
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.0e-07 58.5 62 61.3
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 5.2e-07 58.2 51 68.6
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 6.8e-07 57.8 60 56.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 8.9e-07 57.4 60 61.7
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 8.9e-07 57.4 63 57.1
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 8.9e-07 57.4 93 45.2
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.2e-06 57.0 61 63.9
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-06 56.2 51 60.8
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-06 56.2 51 60.8
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 2.6e-06 55.8 59 59.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.6e-06 55.8 59 55.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 2.6e-06 55.8 59 54.2
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.4e-06 55.5 61 59.0
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 4.4e-06 55.1 61 55.7
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 4.4e-06 55.1 61 55.7
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 5.7e-06 54.7 59 57.6


User provided reference genes

Program Settings