Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 0.0e+00 1100.9 533 100.0
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 3.3e-138 496.1 417 60.9
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 2.0e-135 486.9 452 57.3
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.6e-132 477.2 447 56.6
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 3.5e-132 476.1 415 59.8
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 5.1e-131 472.2 453 57.2
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 9.0e-128 461.5 476 53.2
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 2.0e-127 460.3 448 55.8
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 2.5e-125 453.4 458 52.8
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 4.2e-125 452.6 462 54.1
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 5.1e-123 445.7 430 56.7
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 2.5e-122 443.4 422 55.9
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 2.1e-116 423.7 454 51.1
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 5.7e-114 415.6 431 52.4
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 1.3e-113 414.5 434 51.8
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 4.8e-113 412.5 448 49.8
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 9.1e-112 408.3 417 52.5
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.6e-111 406.8 418 53.6
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.0e-110 404.8 415 51.1
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 1.3e-110 404.4 440 50.5
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.7e-110 404.1 452 48.7
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 8.5e-110 401.7 415 50.8
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 8.5e-110 401.7 415 50.8
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 4.2e-109 399.4 432 49.8
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 4.2e-109 399.4 450 48.9
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 7.2e-109 398.7 436 51.8
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.7e-108 396.7 417 51.1
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.9e-107 392.9 439 49.4
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 5.2e-107 392.5 474 47.9
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 5.2e-107 392.5 421 51.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 9.7e-106 388.3 429 50.1
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 3.7e-105 386.3 414 50.0
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.7e-105 386.3 452 48.2
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 4.1e-104 382.9 422 50.7
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 2.0e-103 380.6 440 47.7
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 1.0e-102 378.3 423 51.8
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.3e-102 377.9 441 50.3
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.3e-102 377.9 417 50.6
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 3.8e-102 376.3 425 51.1
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 5.0e-102 375.9 420 51.0
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 6.5e-102 375.6 421 49.2
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.2e-101 373.2 416 48.1
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 4.2e-101 372.9 437 47.4
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.6e-100 370.9 438 47.0
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 3.0e-99 366.7 420 50.7
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 2.0e-98 364.0 419 49.2
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 5.7e-98 362.5 452 46.2
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 7.5e-98 362.1 382 50.8
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 1.3e-97 361.3 429 48.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.8e-97 360.1 424 50.0
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 4.8e-97 359.4 425 48.5
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 1.4e-96 357.8 456 46.9
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 7.0e-96 355.5 427 48.7
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.0e-95 354.0 421 46.3
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 3.5e-95 353.2 419 49.4
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 4.2e-93 346.3 421 46.8
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 6.1e-92 342.4 446 44.8
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 6.8e-91 339.0 489 43.1
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.6e-90 337.0 415 48.4
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 3.4e-90 336.7 403 47.9
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 9.8e-90 335.1 417 45.6
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 3.7e-89 333.2 425 46.8
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 6.3e-89 332.4 415 48.2
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 1.1e-88 331.6 422 46.2
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 3.5e-87 326.6 422 47.2
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.0e-86 325.1 415 47.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.3e-86 324.7 415 47.2
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.7e-86 324.3 454 42.3
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 5.0e-86 322.8 434 44.7
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 8.6e-86 322.0 437 44.4
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.5e-85 321.2 437 44.6
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 7.2e-85 318.9 477 41.3
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.0e-83 315.1 409 44.7
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.3e-81 308.1 439 42.8
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 3.7e-81 306.6 435 42.8
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 6.3e-81 305.8 446 41.7
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 8.3e-81 305.4 431 43.6
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 2.7e-79 300.4 267 57.3
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 7.8e-79 298.9 410 45.9
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.7e-78 297.7 409 44.5
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 9.5e-77 292.0 424 43.4
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 9.5e-77 292.0 526 37.8
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 5.8e-74 282.7 436 40.6
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 1.7e-73 281.2 426 42.7
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.4e-72 277.3 249 58.6
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 6.4e-65 252.7 242 55.4
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.9e-64 251.1 286 50.0
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.6e-63 248.1 215 58.1
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 8.6e-62 242.3 422 37.4
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 1.5e-61 241.5 433 37.9
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.9e-61 241.1 324 45.1
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.6e-60 238.0 447 36.5
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 4.9e-57 226.5 320 44.7
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.3e-54 217.6 182 56.0
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 1.1e-53 215.3 317 43.2
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.3e-53 213.8 183 56.3
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.2e-47 195.3 154 59.1
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 3.5e-47 193.7 155 60.6
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 4.6e-47 193.4 262 47.3
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.0e-46 190.7 152 67.1
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.3e-45 186.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 5.6e-45 186.4 425 33.2
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.4e-43 181.8 135 60.0
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 1.8e-43 181.4 127 70.9
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.3e-43 179.9 171 56.1
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 5.3e-43 179.9 232 46.6
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 4.9e-41 173.3 419 32.9
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 8.4e-41 172.6 477 30.8
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 2.1e-39 167.9 134 60.4
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 4.6e-39 166.8 118 62.7
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.0e-38 165.6 205 44.4
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.7e-38 164.9 159 54.7
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 3.0e-38 164.1 151 58.3
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 6.6e-38 162.9 293 38.2
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.5e-37 161.8 157 57.3
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 9.6e-37 159.1 187 51.3
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 8.1e-36 156.0 202 43.6
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 8.1e-36 156.0 202 43.6
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.8e-33 147.1 294 38.1
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 8.4e-33 146.0 142 45.1
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 7.1e-32 142.9 141 46.1
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.9e-30 137.1 241 38.6
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.5e-29 134.4 127 56.7
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.0e-25 122.5 143 46.9
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.9e-24 118.2 349 32.7
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 9.3e-24 115.9 129 37.2
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 6.7e-22 109.8 127 48.8
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 8.7e-22 109.4 185 41.1
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.9e-21 108.2 147 45.6
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.8e-17 94.0 96 47.9
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.1e-13 82.4 156 36.5
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.7e-12 77.4 134 41.0
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 1.1e-11 75.9 165 33.9
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.6e-07 62.0 71 40.8
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.0e-06 59.3 106 35.8


User provided reference genes

Program Settings