Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 3.3e-96 355.1 193 100.0
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.4e-57 226.9 207 67.6
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 5.2e-57 224.9 206 64.1
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.2e-55 219.5 187 64.2
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.8e-55 219.2 206 64.6
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.1e-54 217.2 206 64.1
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.1e-54 217.2 206 64.1
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 9.1e-54 214.2 196 65.3
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 3.8e-52 208.8 192 64.1
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.0e-52 208.4 186 65.6
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.9e-51 206.5 196 65.3
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 3.2e-51 205.7 204 60.8
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.2e-50 203.8 202 59.9
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.2e-50 203.8 197 64.5
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.7e-50 201.8 197 62.9
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 8.0e-50 201.1 187 61.5
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 8.8e-49 197.6 194 62.4
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 8.8e-49 197.6 199 59.8
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 1.5e-48 196.8 192 65.6
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.5e-48 196.8 186 64.5
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 2.0e-48 196.4 202 62.4
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.0e-48 196.4 191 60.7
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 2.0e-48 196.4 200 63.5
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 2.6e-48 196.1 188 61.7
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 2.6e-48 196.1 210 59.5
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.6e-48 196.1 186 61.8
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 4.4e-48 195.3 200 62.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.3e-47 193.7 195 59.5
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.3e-47 193.7 193 59.6
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-47 193.4 197 60.9
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-47 193.4 197 60.9
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 2.8e-47 192.6 185 63.2
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 2.8e-47 192.6 184 61.4
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 4.8e-47 191.8 184 64.1
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 4.8e-47 191.8 184 64.1
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 4.8e-47 191.8 185 62.7
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 8.3e-47 191.0 184 64.1
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 8.3e-47 191.0 184 64.1
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 8.3e-47 191.0 196 59.2
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 8.3e-47 191.0 194 56.7
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 1.1e-46 190.7 202 60.9
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.4e-46 190.3 183 62.8
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 1.4e-46 190.3 189 60.3
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.8e-46 189.9 184 64.1
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.8e-46 189.9 189 60.3
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.8e-46 189.9 189 59.3
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 4.1e-46 188.7 196 61.2
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.2e-45 187.2 199 55.8
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 2.7e-45 186.0 209 55.5
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 3.5e-45 185.7 192 57.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 4.5e-45 185.3 188 56.4
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 5.9e-45 184.9 183 59.6
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 7.7e-45 184.5 196 60.2
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 7.7e-45 184.5 186 57.0
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 2.2e-44 183.0 183 59.0
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 2.9e-44 182.6 203 56.2
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 5.0e-44 181.8 205 55.1
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.1e-43 180.6 198 60.1
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.5e-43 180.3 193 59.6
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 1.9e-43 179.9 188 54.8
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.9e-43 179.9 196 57.7
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 2.5e-43 179.5 185 58.9
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 4.2e-43 178.7 204 57.4
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 4.2e-43 178.7 249 50.2
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 5.5e-43 178.3 185 58.4
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 5.5e-43 178.3 197 57.4
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 7.2e-43 177.9 188 55.9
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.2e-43 177.9 186 57.0
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.2e-43 177.9 186 57.5
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.2e-42 177.2 188 59.0
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.6e-42 176.8 191 55.5
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.7e-42 176.0 199 53.3
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 4.7e-42 175.3 198 54.5
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 4.7e-42 175.3 219 53.9
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.7e-42 175.3 192 54.7
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 4.7e-42 175.3 193 57.5
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 6.1e-42 174.9 198 57.1
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.0e-41 174.1 195 57.9
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.4e-41 173.7 186 56.5
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 3.0e-41 172.6 187 55.6
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 4.0e-41 172.2 197 54.3
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 5.2e-41 171.8 191 55.0
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 6.8e-41 171.4 212 55.2
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 6.8e-41 171.4 189 54.5
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 8.8e-41 171.0 192 57.3
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.2e-40 170.6 179 60.3
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.2e-40 170.6 189 54.0
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.0e-40 169.9 183 59.0
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 5.7e-40 168.3 183 59.0
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 9.8e-40 167.5 187 58.3
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.8e-38 163.3 179 59.2
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.8e-38 163.3 179 59.2
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 2.4e-38 162.9 208 50.5
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 2.4e-38 162.9 212 50.9
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 3.1e-38 162.5 234 48.3
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 4.1e-38 162.2 208 49.5
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 7.0e-38 161.4 209 50.2
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.6e-37 160.2 217 51.2
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-37 160.2 185 55.1
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 3.5e-37 159.1 188 48.9
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 5.9e-37 158.3 246 47.6
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 5.9e-37 158.3 246 47.6
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.9e-37 158.3 191 50.3
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.7e-36 156.8 226 46.9
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.8e-33 146.7 155 60.6
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 1.8e-33 146.7 193 49.7
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 6.8e-33 144.8 186 47.8
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 3.4e-32 142.5 193 44.6
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.2e-29 134.0 182 49.5
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.3e-28 129.8 158 53.8
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 8.6e-28 127.9 159 49.7
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.9e-27 126.7 204 45.1
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 1.9e-27 126.7 149 53.0
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 4.3e-27 125.6 180 48.3
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 4.3e-27 125.6 188 45.2
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 9.5e-27 124.4 131 62.6
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.1e-25 119.4 180 45.6
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.9e-25 117.9 118 56.8
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.3e-23 114.0 143 53.8
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.4e-22 110.5 153 50.3
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 7.0e-22 108.2 125 54.4
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 6.0e-21 105.1 186 41.4
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 1.7e-20 103.6 191 38.7
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 1.9e-19 100.1 184 35.3
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.8e-18 96.3 184 42.4
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 2.8e-18 96.3 179 38.0
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 3.4e-16 89.4 194 34.5
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 5.8e-16 88.6 175 33.7
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.1e-14 82.4 67 64.2
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 8.6e-12 74.7 168 38.7
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 5.2e-09 65.5 108 40.7
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.0e-08 63.5 113 37.2
CDE10G0174 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.1e-06 57.8 64 51.6


User provided reference genes

Program Settings