Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.7e-205 718.8 454 100.0
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.8e-53 213.8 446 43.5
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.0e-52 209.9 451 41.5
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 6.4e-50 202.6 420 40.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.4e-49 201.4 477 41.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.6e-48 198.0 482 39.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.3e-46 190.3 407 38.1
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.8e-44 184.5 479 37.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.1e-44 183.7 408 36.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-43 181.4 467 37.5
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 5.8e-43 179.5 346 40.2
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 7.6e-43 179.1 423 41.6
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 7.6e-43 179.1 423 41.6
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-42 178.7 358 39.1
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.5e-41 172.9 480 35.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.1e-40 171.0 343 38.8
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.7e-40 170.6 413 40.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.0e-40 169.5 340 37.9
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.3e-39 168.3 537 33.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.9e-38 164.5 382 40.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.6e-37 161.4 409 35.7
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.8e-37 160.6 419 35.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.4e-36 158.3 353 37.7
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 9.0e-36 155.6 462 35.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-35 154.5 348 37.9
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-34 151.8 372 34.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-34 151.8 372 34.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 2.2e-34 151.0 404 37.6
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 2.9e-34 150.6 408 35.5
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.8e-34 150.2 370 36.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.8e-34 150.2 459 37.9
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 5.0e-34 149.8 369 36.6
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.5e-34 149.4 426 34.5
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.1e-33 148.7 378 33.9
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.9e-33 147.9 348 36.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.2e-33 147.1 372 35.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.2e-33 147.1 408 35.3
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-32 145.2 393 34.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.6e-32 144.8 450 34.4
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 6.1e-32 142.9 302 37.4
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.1e-32 142.9 345 36.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.5e-30 138.3 435 34.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.5e-30 137.5 472 35.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.5e-30 137.5 448 34.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.3e-30 136.7 357 34.2
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.7e-30 136.3 409 32.0
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 7.4e-30 136.0 424 34.2
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.7e-29 134.8 463 31.7
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.8e-29 133.3 410 31.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.4e-28 131.7 436 35.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.4e-28 131.0 482 31.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.5e-27 128.3 373 33.5
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.5e-27 128.3 373 33.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.5e-27 126.7 380 33.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.0e-26 125.6 404 32.2
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.3e-26 125.2 404 30.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 2.9e-26 124.0 393 32.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.8e-26 123.6 422 30.8
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 5.0e-26 123.2 583 29.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 8.5e-26 122.5 438 30.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.1e-25 122.1 469 34.8
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-25 122.1 414 30.2
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.5e-25 120.9 426 30.3
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.5e-25 119.8 529 32.9
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.7e-24 117.5 418 34.9
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 2.7e-24 117.5 399 34.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 3.6e-24 117.1 123 63.4
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.8e-23 114.8 523 31.4
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.6e-22 110.9 450 29.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.3e-22 110.5 440 28.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.2e-21 107.8 470 31.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 6.3e-21 106.3 332 32.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-20 105.5 482 28.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 2.4e-20 104.4 488 30.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.4e-20 104.4 325 35.1
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.1e-20 104.0 492 31.5
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.3e-20 103.2 491 28.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.0e-20 102.8 528 27.5
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.1e-20 102.4 456 30.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.2e-19 102.1 518 30.1
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-19 100.5 320 29.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.5e-19 100.5 465 27.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.7e-19 99.4 481 26.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 7.7e-19 99.4 355 33.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 7.7e-19 99.4 355 33.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.0e-18 99.0 368 29.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.3e-18 98.6 479 27.1
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.3e-18 98.6 519 27.4
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-18 98.6 356 33.1
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.2e-18 97.8 490 34.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.9e-18 97.4 520 28.5
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 5.0e-18 96.7 490 26.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 5.0e-18 96.7 383 33.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 6.5e-18 96.3 503 27.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.1e-17 95.5 272 40.4
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-17 95.5 464 27.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 4.2e-17 93.6 462 32.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 9.4e-17 92.4 499 30.1
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 9.4e-17 92.4 499 30.1
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 9.4e-17 92.4 502 31.1
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-16 92.0 128 46.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.6e-16 91.7 529 31.8
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.1e-16 91.3 210 36.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.7e-16 90.9 463 27.6
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 3.6e-16 90.5 345 28.4
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 6.1e-16 89.7 137 45.3
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 8.0e-16 89.4 546 27.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.8e-15 88.2 124 62.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.3e-15 87.8 540 28.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.0e-15 87.4 464 27.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 3.9e-15 87.0 473 28.3
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.7e-15 86.3 541 27.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 8.8e-15 85.9 444 29.1
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 8.8e-15 85.9 385 29.9
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.1e-14 85.5 369 27.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.5e-14 85.1 460 27.8
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.3e-14 84.0 126 53.2
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 4.4e-14 83.6 129 50.4
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 9.7e-14 82.4 461 30.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 9.7e-14 82.4 130 54.6
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.2e-13 81.3 226 35.0
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-13 81.3 388 27.6
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 4.8e-13 80.1 532 27.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.8e-13 80.1 79 51.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.1e-12 79.0 78 53.8
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.4e-12 77.8 478 25.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 3.1e-12 77.4 75 60.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 5.3e-12 76.6 76 61.8
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.0e-12 76.3 472 26.5
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.2e-11 75.5 487 24.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.0e-11 74.7 122 45.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 2.0e-11 74.7 472 29.2
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.5e-11 73.6 332 29.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.7e-11 72.8 362 30.4
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.9e-10 70.9 128 38.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-10 70.5 496 24.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-09 68.9 379 30.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.5e-09 68.6 56 62.5
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.5e-09 68.6 62 59.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.9e-09 68.2 372 26.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.2e-09 67.0 469 25.6
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 4.2e-09 67.0 124 42.7
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 9.4e-09 65.9 127 40.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.2e-08 65.5 391 28.9
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.6e-08 65.1 364 29.1
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.6e-08 65.1 341 28.2
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.6e-08 63.9 219 31.5
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.7e-08 63.5 267 27.3
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.7e-08 63.5 96 51.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.7e-08 63.5 96 51.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.0e-07 60.5 172 33.7
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.0e-07 60.5 352 25.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.8e-07 59.7 361 24.4
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 6.8e-07 59.7 44 70.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.4e-06 57.4 342 26.6
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.4e-06 57.0 69 46.4
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 7.5e-06 56.2 93 35.5
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.7e-06 55.8 144 34.7


User provided reference genes

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