Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 0.0e+00 1176.0 641 100.0
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 3.4e-81 307.0 324 54.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.0e-80 305.4 294 58.8
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.7e-78 297.4 311 55.0
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 7.9e-78 295.8 668 37.3
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.3e-77 295.0 645 37.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 8.7e-77 292.4 322 55.0
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.1e-76 292.0 312 56.1
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.3e-76 290.4 308 56.2
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 3.7e-75 287.0 312 56.1
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 8.2e-75 285.8 309 55.0
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.8e-74 284.6 349 52.4
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 5.3e-74 283.1 333 52.6
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 9.0e-74 282.3 298 55.7
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.0e-73 281.2 284 59.5
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.6e-73 280.8 298 57.0
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.6e-73 280.8 334 53.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.2e-72 277.7 297 56.2
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 2.2e-72 277.7 661 36.3
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.2e-72 277.7 331 52.9
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 8.5e-72 275.8 325 52.6
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 2.3e-69 267.7 318 52.8
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 5.1e-69 266.5 465 42.4
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 2.0e-68 264.6 293 56.0
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 4.3e-68 263.5 465 42.2
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.2e-67 261.2 303 51.5
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.4e-66 258.5 340 48.5
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.4e-66 257.7 330 50.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.0e-65 254.6 307 52.1
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.6e-65 254.2 320 49.7
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.9e-64 250.8 311 52.1
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.0e-64 250.0 313 49.5
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 6.5e-64 249.6 304 51.0
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 1.1e-63 248.8 310 47.4
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.4e-63 248.4 598 36.5
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.9e-63 248.1 313 49.5
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.5e-63 246.5 313 49.5
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 9.4e-63 245.7 673 34.8
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 4.7e-62 243.4 554 39.4
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 6.1e-62 243.0 313 48.6
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.3e-61 241.1 651 34.3
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 3.9e-61 240.4 301 49.2
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.6e-60 237.7 641 39.0
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 5.7e-60 236.5 278 50.4
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 5.7e-60 236.5 322 48.4
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 7.4e-60 236.1 294 46.6
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 9.7e-60 235.7 641 38.8
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 9.7e-60 235.7 586 36.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 9.7e-60 235.7 278 50.4
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 6.3e-59 233.0 315 45.1
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.4e-58 231.1 306 47.7
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.2e-57 228.8 308 46.8
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.0e-57 228.0 287 49.1
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.5e-57 227.3 327 44.0
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 3.5e-57 227.3 429 40.1
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.2e-56 224.6 542 34.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.9e-56 224.2 315 44.8
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 6.5e-56 223.0 378 40.7
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.1e-55 222.2 292 45.9
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.5e-55 221.9 584 35.8
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.9e-55 221.5 319 43.3
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 4.2e-55 220.3 324 43.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 9.4e-55 219.2 299 46.8
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.2e-54 218.8 339 44.2
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.2e-54 218.8 321 45.2
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.1e-54 218.0 323 46.4
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.6e-54 217.2 297 46.5
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 6.1e-54 216.5 281 46.6
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 6.1e-54 216.5 325 42.2
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 8.0e-54 216.1 295 47.1
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 3.0e-53 214.2 324 44.1
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.0e-53 214.2 293 45.7
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.2e-53 213.4 337 41.8
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 8.8e-53 212.6 276 46.0
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.1e-52 212.2 313 46.3
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.5e-52 211.8 284 48.9
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.6e-52 211.1 304 44.4
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 3.3e-52 210.7 647 31.5
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 3.3e-52 210.7 334 40.7
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 3.3e-52 210.7 334 40.7
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 2.8e-51 207.6 312 48.1
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 4.8e-51 206.8 318 44.7
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 6.3e-51 206.5 460 38.0
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.3e-51 206.5 443 36.6
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 8.2e-51 206.1 296 47.3
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.4e-50 204.5 304 44.7
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 3.1e-50 204.1 285 46.3
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 7.0e-50 203.0 315 44.4
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 7.0e-50 203.0 282 42.9
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 3.5e-49 200.7 315 44.4
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 3.5e-49 200.7 315 44.4
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 4.5e-49 200.3 330 43.6
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 7.7e-49 199.5 285 46.3
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.0e-48 199.1 274 44.5
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.7e-48 198.4 315 45.4
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 3.8e-48 197.2 275 48.0
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 3.8e-48 197.2 323 44.0
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 8.5e-48 196.1 315 45.1
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 8.5e-48 196.1 315 45.1
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 1.1e-47 195.7 320 45.0
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.1e-47 195.7 319 44.2
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.1e-47 195.7 652 31.9
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.4e-47 192.6 307 42.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 1.8e-45 188.3 308 42.5
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 2.3e-45 188.0 708 31.4
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.5e-44 185.3 252 46.0
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 2.9e-40 171.0 280 39.6
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 3.2e-39 167.5 526 34.2
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 7.2e-39 166.4 249 45.0
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.0e-37 162.5 253 46.6
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 6.8e-37 159.8 200 47.0
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 2.6e-36 157.9 278 41.4
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 7.5e-36 156.4 641 28.7
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.7e-35 155.2 280 38.6
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.4e-34 151.4 235 42.1
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 5.0e-32 143.7 237 41.8
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 6.1e-30 136.7 256 40.6
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 4.4e-28 130.6 287 34.8
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.3e-27 126.7 281 36.3
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.8e-21 108.6 287 32.8
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 5.8e-20 103.6 164 40.2
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.7e-17 94.7 326 29.8
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.3e-16 92.4 269 29.0
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.1e-13 82.8 263 31.9
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.8e-13 82.0 172 35.5
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 5.2e-13 80.5 274 27.7
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.7e-11 74.3 302 28.5
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.1e-07 62.8 46 67.4
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 4.3e-07 60.8 372 26.3


User provided reference genes

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