Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.3e-108 396.4 201 100.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 7.9e-93 344.0 200 84.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.6e-91 339.0 200 84.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.7e-90 336.3 199 83.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 2.2e-90 335.9 199 83.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 3.1e-89 332.0 200 81.0
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 5.3e-89 331.3 200 81.5
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.6e-88 328.9 200 80.5
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 7.7e-88 327.4 200 81.0
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 7.7e-88 327.4 199 81.9
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.3e-87 326.6 200 80.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.7e-87 326.2 199 80.9
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.9e-87 325.5 198 81.3
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 3.8e-87 325.1 200 81.0
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.0e-87 324.7 200 82.0
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.1e-86 323.6 198 78.3
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.9e-86 322.8 200 81.0
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.9e-86 322.8 198 78.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.9e-86 322.8 199 81.4
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.5e-86 322.4 200 81.5
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 3.2e-86 322.0 200 80.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 5.5e-86 321.2 198 77.8
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 7.2e-86 320.9 199 79.9
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 8.0e-85 317.4 199 79.9
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.0e-84 317.0 200 78.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.4e-84 316.6 200 80.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.0e-84 315.5 199 79.4
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 3.9e-84 315.1 200 77.5
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 5.2e-84 314.7 200 78.0
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.1e-83 313.5 200 78.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-83 313.5 200 78.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.1e-83 313.5 200 77.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.5e-83 313.2 200 77.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 2.0e-83 312.8 198 78.8
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 9.7e-83 310.5 200 76.5
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 9.7e-83 310.5 200 76.5
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 2.2e-82 309.3 198 76.3
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.8e-82 308.9 200 78.5
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.8e-82 308.1 198 76.3
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 4.8e-82 308.1 198 76.8
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 4.8e-82 308.1 199 76.9
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.1e-81 307.0 198 76.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.4e-81 306.6 200 78.0
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-81 305.4 200 76.5
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 5.3e-81 304.7 192 77.6
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 5.3e-81 304.7 200 75.5
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 7.0e-81 304.3 200 76.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 9.1e-81 303.9 199 77.9
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.6e-80 303.1 200 75.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.6e-80 303.1 200 75.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 5.9e-80 301.2 198 75.3
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 75.0
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 75.0
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 75.0
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 75.0
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 75.5
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 75.3
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.7e-79 299.7 200 75.0
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.7e-79 299.7 200 76.0
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 3.8e-79 298.5 201 72.1
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 3.8e-79 298.5 199 74.9
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 3.8e-79 298.5 200 74.5
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 3.8e-79 298.5 199 74.9
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 3.8e-79 298.5 195 76.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 5.0e-79 298.1 200 74.5
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.0e-79 298.1 200 74.5
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.5e-79 297.4 198 74.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.1e-78 297.0 200 74.0
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-78 296.2 199 74.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.9e-78 296.2 198 73.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 73.0
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 3.2e-78 295.4 199 73.9
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.2e-78 295.0 200 75.0
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.2e-78 295.0 201 75.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.1e-77 292.7 204 75.0
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.1e-77 292.7 198 74.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.7e-77 292.4 200 73.0
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.7e-77 291.6 210 71.0
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.7e-77 291.6 195 74.9
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 4.7e-77 291.6 201 72.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 6.1e-77 291.2 200 73.0
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.0e-76 290.4 201 73.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 201 72.1
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 2.3e-76 289.3 198 72.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.0e-76 288.5 199 75.4
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 4.0e-76 288.5 200 73.0
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 5.2e-76 288.1 198 72.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 6.7e-76 287.7 198 76.3
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.7e-76 287.7 203 70.9
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.2e-75 287.0 199 72.4
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 9.7e-75 283.9 194 73.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.7e-74 283.1 195 72.3
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 8.2e-74 280.8 182 75.8
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.4e-73 280.0 200 70.5
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 70.7
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 4.1e-73 278.5 200 70.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 4.1e-73 278.5 201 69.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.3e-73 278.1 183 74.9
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 7.7e-72 274.2 195 69.7
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 5.0e-71 271.6 329 49.8
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.5e-70 270.0 200 69.0
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.9e-70 269.6 177 75.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 5.5e-70 268.1 201 70.1
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.4e-70 267.3 195 70.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.2e-69 266.9 193 69.4
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.7e-69 265.8 184 73.4
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-69 265.8 175 73.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.7e-69 265.8 202 68.8
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 4.0e-68 261.9 198 65.7
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 5.2e-68 261.5 199 68.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 6.8e-68 261.2 181 73.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 8.8e-68 260.8 185 67.6
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 4.4e-67 258.5 179 72.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 5.7e-67 258.1 201 65.7
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.7e-64 249.2 194 61.9
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.5e-64 248.4 167 77.8
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.9e-63 245.7 220 60.0
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.9e-62 243.0 219 59.4
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 7.2e-62 241.1 239 57.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.2e-62 241.1 253 55.7
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.4e-57 226.9 235 56.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 7.0e-57 224.6 167 68.9
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.4e-51 205.3 198 51.0
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.7e-50 203.4 228 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 8.3e-50 201.1 190 53.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 8.6e-47 191.0 112 82.1
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.9e-46 189.9 128 75.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 4.0e-44 182.2 112 77.7
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.2e-43 180.6 194 51.5
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 3.7e-42 175.6 200 48.5
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.4e-41 172.9 112 74.1
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-40 170.6 117 70.1
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-38 164.1 115 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.8e-37 159.5 178 47.8
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-34 149.8 94 73.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.1e-33 147.5 166 48.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-31 141.0 81 82.7
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.7e-31 140.2 214 41.1
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.6e-31 138.3 103 67.0
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.6e-31 138.3 81 81.5
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 8.6e-31 137.9 85 78.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-28 130.6 81 77.8
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 3.4e-27 125.9 87 72.4
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 9.9e-27 124.4 209 37.8
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-24 116.3 127 51.2
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.0e-23 112.8 100 64.0
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.9e-22 110.2 130 47.7
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 9.6e-22 107.8 71 80.3
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.1e-21 106.7 77 66.2
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.2e-21 105.1 68 72.1
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 5.3e-20 102.1 103 53.4
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-18 97.4 70 67.1
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 6.4e-18 95.1 197 32.5
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.4e-18 94.7 72 65.3
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 2.4e-17 93.2 75 64.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 5.4e-17 92.0 105 50.5
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.7e-16 89.7 193 31.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-15 87.4 112 47.3
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 3.3e-14 82.8 49 71.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 6.2e-13 78.6 45 82.2
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 4.2e-09 65.9 42 66.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 9.3e-09 64.7 65 50.8
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 3.0e-07 59.7 40 65.0
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 6.7e-07 58.5 70 42.9
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 1.5e-06 57.4 36 63.9
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.9e-06 57.0 42 71.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 3.3e-06 56.2 49 53.1
Cpa.g.c28652 Carica papaya HOM05D004366 ORTHO05D005058 9.6e-06 54.7 29 86.2


User provided reference genes

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