Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.4e-78 296.2 149 100.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.7e-31 139.8 98 67.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.8e-31 138.7 94 70.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.4e-30 136.7 94 69.1
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.4e-30 136.0 94 68.1
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 9.2e-30 134.0 98 67.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.8e-29 131.0 98 65.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.7e-28 129.8 98 63.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.7e-28 129.8 98 66.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.0e-28 129.0 98 66.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.0e-28 129.0 93 65.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 6.6e-28 127.9 94 64.9
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 6.6e-28 127.9 98 64.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 8.7e-28 127.5 96 64.6
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.3e-27 125.6 98 60.2
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.3e-27 125.6 98 64.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 4.3e-27 125.2 98 60.2
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.3e-27 125.2 98 64.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 7.3e-27 124.4 98 60.2
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 9.6e-27 124.0 98 63.3
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 9.6e-27 124.0 93 63.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-26 123.6 98 63.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.2e-26 123.6 93 63.4
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.1e-26 122.9 98 57.1
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.1e-26 122.9 98 61.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.1e-26 122.9 98 61.2
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.1e-26 122.9 96 59.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.6e-26 122.1 98 61.2
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.6e-26 122.1 98 62.2
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.6e-26 122.1 98 62.2
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.6e-26 122.1 98 62.2
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 63.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 63.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 63.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 63.3
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 60.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 4.7e-26 121.7 98 58.2
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 6.2e-26 121.3 90 67.8
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 6.2e-26 121.3 94 61.7
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 8.1e-26 120.9 98 58.2
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.1e-25 120.6 98 61.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.1e-25 120.6 103 60.2
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.8e-25 119.8 98 61.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.4e-25 119.4 98 60.2
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.1e-25 119.0 98 61.2
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 3.1e-25 119.0 89 67.4
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.1e-25 119.0 100 60.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 5.2e-25 118.2 109 56.0
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.2e-25 118.2 98 59.2
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 5.2e-25 118.2 94 59.6
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 5.2e-25 118.2 98 56.1
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 6.9e-25 117.9 98 60.2
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 6.9e-25 117.9 94 60.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 9.0e-25 117.5 98 56.1
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 9.0e-25 117.5 98 57.1
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-24 116.7 95 58.9
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.5e-24 116.7 94 59.6
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-24 116.3 98 60.2
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.0e-24 116.3 97 57.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.4e-24 115.5 96 59.4
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.8e-24 114.8 97 58.8
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 9.9e-24 114.0 97 58.8
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.2e-23 112.8 96 57.3
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.2e-23 112.8 98 58.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 2.2e-23 112.8 94 60.6
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.9e-23 112.5 101 55.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.8e-23 112.1 98 53.1
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 6.4e-23 111.3 96 59.4
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 6.4e-23 111.3 99 55.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 6.4e-23 111.3 100 55.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 8.4e-23 110.9 95 56.8
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.4e-22 110.2 98 54.1
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.4e-22 110.2 98 54.1
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.4e-22 110.2 98 56.1
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-22 109.8 98 58.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-22 109.8 98 58.2
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.4e-22 109.4 98 55.1
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 3.2e-22 109.0 98 58.2
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 9.3e-22 107.5 98 59.2
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.6e-21 106.7 88 59.1
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.1e-21 106.3 98 54.1
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.1e-21 106.3 98 54.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.7e-21 105.9 91 59.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 7.8e-21 104.4 94 53.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.3e-20 102.8 98 55.1
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.3e-20 102.8 88 59.1
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.5e-19 100.1 77 59.7
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.3e-19 97.8 97 55.7
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.2e-18 94.7 72 61.1
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.1e-17 94.0 99 48.5
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.8e-17 93.2 86 53.5
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.4e-17 92.8 94 53.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.2e-16 90.5 84 54.8
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.0e-16 89.7 99 46.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 7.6e-16 87.8 81 53.1
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.9e-16 87.4 77 54.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.9e-16 87.4 77 54.5
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.3e-15 87.0 82 57.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.3e-15 87.0 80 53.8
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.7e-15 86.7 82 58.5
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.7e-15 86.7 94 46.8
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 3.8e-15 85.5 76 57.9
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 8.4e-15 84.3 82 56.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-14 83.6 69 60.9
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.2e-13 80.5 99 50.5
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.1e-12 75.1 76 55.3
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 5.1e-12 75.1 89 44.9
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-11 73.9 77 51.9
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-11 73.9 77 51.9
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 1.5e-11 73.6 63 61.9
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.5e-11 73.6 77 50.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.3e-11 72.4 81 53.1
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.6e-11 71.6 84 47.6
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.1e-10 69.7 79 45.6
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.8e-10 69.3 75 49.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.8e-10 68.6 74 45.9
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-09 67.4 83 48.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.4e-09 67.0 60 55.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.8e-09 66.6 62 54.8
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-09 66.2 82 45.1
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.4e-09 66.2 77 50.6
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.4e-09 66.2 64 57.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.1e-09 65.9 68 52.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.0e-09 65.5 66 47.0
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 5.3e-09 65.1 69 44.9
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.3e-09 65.1 67 49.3
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 6.9e-09 64.7 69 46.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 6.9e-09 64.7 69 46.4
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 6.9e-09 64.7 68 48.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.9e-09 64.7 69 46.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 9.0e-09 64.3 69 46.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-08 63.9 64 53.1
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.2e-08 63.9 69 47.8
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.5e-08 63.5 74 47.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.0e-08 63.2 70 52.9
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.4e-08 62.4 70 50.0
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.4e-08 62.4 90 41.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-08 62.0 87 44.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-08 62.0 87 44.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-08 62.0 87 44.8
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.5e-08 62.0 64 50.0
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.8e-08 61.6 64 46.9
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.7e-07 60.1 60 53.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.7e-07 60.1 115 38.3
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.7e-07 60.1 75 46.7
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 1.7e-07 60.1 79 39.2
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.7e-07 60.1 90 42.2
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 2.2e-07 59.7 63 46.0
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.9e-07 59.3 71 42.3
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.9e-07 59.3 66 48.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 4.9e-07 58.5 66 50.0
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 6.4e-07 58.2 71 43.7
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 6.4e-07 58.2 71 43.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.1e-06 57.4 64 50.0
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 2.4e-06 56.2 38 63.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.4e-06 56.2 74 43.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 4.2e-06 55.5 64 51.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.2e-06 55.5 80 40.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 5.5e-06 55.1 66 45.5
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 7.1e-06 54.7 64 48.4
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 7.1e-06 54.7 64 48.4
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 7.1e-06 54.7 64 50.0
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 7.1e-06 54.7 64 50.0
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 9.3e-06 54.3 64 48.4
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 9.3e-06 54.3 64 48.4
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 9.3e-06 54.3 64 48.4
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 9.3e-06 54.3 64 48.4
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.3e-06 54.3 64 46.9


User provided reference genes

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