Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc126.9 Carica papaya HOM05D008870 ORTHO05D010906 8.7e-84 313.5 152 100.0
Cpa.g.sc2.254 Carica papaya HOM05D000004 ORTHO05D000002 2.0e-35 152.9 160 48.8
Cpa.g.sc9.320 Carica papaya HOM05D008870 ORTHO05D010906 1.7e-34 149.8 147 51.0
Manes.11G130716 Manihot esculenta HOM05D000004 ORTHO05D000002 8.5e-31 137.5 162 44.4
Manes.17G007266 Manihot esculenta HOM05D000004 ORTHO05D000002 1.9e-30 136.3 156 44.2
Manes.08G059801 Manihot esculenta HOM05D000004 ORTHO05D000002 1.6e-29 133.3 162 42.6
Manes.06G033812 Manihot esculenta HOM05D000004 ORTHO05D000002 2.7e-29 132.5 153 45.1
Manes.17G016004 Manihot esculenta HOM05D000004 ORTHO05D000002 3.6e-29 132.1 156 44.2
Manes.17G118357 Manihot esculenta HOM05D000004 ORTHO05D000002 3.6e-29 132.1 156 43.6
SHI48351 Sapria himalayana HOM05D000004 ORTHO05D000002 1.8e-28 129.8 159 43.4
SHI24712 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-28 127.5 151 43.0
SHI02827 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-26 123.6 140 45.0
Cpa.g.sc4.25 Carica papaya HOM05D000004 ORTHO05D000002 2.8e-26 122.5 140 47.9
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 6.3e-26 121.3 134 48.5
Cpa.g.sc448.2 Carica papaya HOM05D008870 ORTHO05D010906 1.4e-25 120.2 125 46.4
Manes.03G138751 Manihot esculenta HOM05D000004 ORTHO05D000002 5.4e-25 118.2 84 56.0
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 1.6e-24 116.7 135 47.4
Cpa.g.sc112.15 Carica papaya HOM05D000004 ORTHO05D000002 7.7e-24 114.4 133 45.9
Cpa.g.sc12.244 Carica papaya HOM05D008870 ORTHO05D010906 7.7e-24 114.4 137 46.0
Cpa.g.sc205.29 Carica papaya HOM05D000004 ORTHO05D000002 7.7e-24 114.4 69 71.0
SHI48738 Sapria himalayana HOM05D000004 ORTHO05D000002 2.2e-23 112.8 145 42.8
Cpa.g.sc65.114 Carica papaya HOM05D008870 ORTHO05D010906 3.8e-23 112.1 142 42.3
SHI33292 Sapria himalayana HOM05D000004 ORTHO05D000002 1.1e-22 110.5 132 44.7
Oeu015199.1 Olea europaea HOM05D000004 ORTHO05D000002 1.9e-22 109.8 74 62.2
Manes.01G065550 Manihot esculenta HOM05D008870 ORTHO05D010906 1.6e-21 106.7 143 39.9
Manes.12G088990 Manihot esculenta HOM05D000004 ORTHO05D000002 3.6e-21 105.5 151 37.7
Cpa.g.sc8.320 Carica papaya HOM05D008870 ORTHO05D010906 2.3e-20 102.8 106 51.9
Cpa.g.sc18.30 Carica papaya HOM05D008870 ORTHO05D010906 3.0e-20 102.4 135 40.7
Cpa.g.sc9.44 Carica papaya HOM05D008870 ORTHO05D010906 1.2e-19 100.5 126 44.4
Cpa.g.sc79.23 Carica papaya HOM05D008870 ORTHO05D010906 7.5e-19 97.8 136 39.0
QL05p032758 Quercus lobata HOM05D000004 ORTHO05D000002 7.5e-19 97.8 151 35.1
Sp7g21440 Schrenkiella parvula HOM05D000004 ORTHO05D000002 9.8e-19 97.4 151 31.8
Thhalv10012141m.g Eutrema salsugineum HOM05D000004 ORTHO05D000002 1.3e-18 97.1 170 35.3
Cpa.g.sc3.90 Carica papaya HOM05D000004 ORTHO05D000002 2.4e-17 92.8 73 53.4
Cpa.g.sc420.2 Carica papaya HOM05D008870 ORTHO05D010906 7.8e-16 87.8 84 45.2
QL03p019459 Quercus lobata HOM05D000004 ORTHO05D000002 1.0e-15 87.4 120 40.0
Cpa.g.sc519.7 Carica papaya HOM05D008870 ORTHO05D010906 3.8e-15 85.5 115 40.9
BolC4t24363H Brassica oleracea HOM05D000050 ORTHO05D000771 1.9e-14 83.2 164 30.5
SHI10884 Sapria himalayana HOM05D000004 ORTHO05D000002 5.6e-14 81.6 113 41.6
TWI56G0901 Tripterygium wilfordii HOM05D000004 ORTHO05D000048 9.5e-14 80.9 167 26.3
Cpa.g.sc23.138 Carica papaya HOM05D000004 ORTHO05D000002 1.2e-13 80.5 137 36.5
Cpa.g.sc56.5 Carica papaya HOM05D008870 ORTHO05D010906 1.2e-13 80.5 99 44.4
CiPaw.09G207300 Carya illinoinensis HOM05D000004 ORTHO05D000002 4.7e-13 78.6 73 47.9
Cpa.g.sc50.21 Carica papaya HOM05D008870 ORTHO05D010906 2.3e-12 76.3 113 36.3
SHI18702 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-12 75.9 62 50.0
Cpa.g.sc43.23 Carica papaya HOM05D008870 ORTHO05D010906 2.6e-11 72.8 101 39.6
SpUn0035_0010 Schrenkiella parvula HOM05D000004 ORTHO05D000002 2.6e-11 72.8 165 27.3
Thhalv10026804m.g Eutrema salsugineum HOM05D000004 ORTHO05D000002 5.7e-11 71.6 140 32.9
SHI46302 Sapria himalayana HOM05D000004 ORTHO05D000002 7.5e-11 71.2 127 33.1
SpUn0005_0210 Schrenkiella parvula HOM05D000004 ORTHO05D000002 1.3e-10 70.5 132 30.3
BcaB05g24306 Brassica carinata HOM05D000004 ORTHO05D000002 1.7e-10 70.1 75 42.7
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 4.9e-10 68.6 84 39.3
QL12p011078 Quercus lobata HOM05D000432 ORTHO05D000002 4.9e-10 68.6 76 36.8
Cpa.g.sc150.39 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-09 67.4 108 38.0
C05p26260 Brassica napus HOM05D000079 ORTHO05D006933 2.4e-09 66.2 72 40.3
CSS0049798 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.2e-09 65.9 154 27.3
CiPaw.03G095100 Carya illinoinensis HOM05D000004 ORTHO05D000002 4.1e-09 65.5 67 37.3
Thhalv10027465m.g Eutrema salsugineum HOM05D000004 ORTHO05D000002 4.1e-09 65.5 148 31.8
CSS0007557 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 7.0e-09 64.7 83 39.8
Cpa.g.sc123.28 Carica papaya HOM05D008870 ORTHO05D010906 7.0e-09 64.7 50 56.0
PSO478G0834 Papaver somniferum HOM05D000004 ORTHO05D000002 1.2e-08 63.9 54 50.0
Cpa.g.sc71.9 Carica papaya HOM05D008870 ORTHO05D010906 1.6e-08 63.5 88 38.6
BolC6t38605H Brassica oleracea HOM05D000004 ORTHO05D000002 2.7e-08 62.8 151 29.1
TAR643G0001 Trochodendron aralioides HOM05D000004 ORTHO05D000002 2.7e-08 62.8 59 40.7
PSO478G3301 Papaver somniferum HOM05D000004 ORTHO05D000002 4.6e-08 62.0 81 37.0
RcHm_v2.0_Chr5g0078031 Rosa chinensis HOM05D000004 ORTHO05D000002 5.9e-08 61.6 95 33.7
Atru.chr6.521 Acer truncatum HOM05D000004 ORTHO05D000002 7.8e-08 61.2 86 38.4
Nn2g14946 Nelumbo nucifera HOM05D067151 ORTHO05D000002 7.8e-08 61.2 138 29.0
Actinidia13475 Actinidia chinensis HOM05D000004 ORTHO05D000002 1.0e-07 60.8 127 28.3
COL.COLO4_12322 Corchorus olitorius HOM05D015139 ORTHO05D013281 1.0e-07 60.8 78 39.7
COL.COLO4_33476 Corchorus olitorius HOM05D000004 ORTHO05D000002 1.0e-07 60.8 78 38.5
PSO170G4312 Papaver somniferum HOM05D000004 ORTHO05D000002 1.0e-07 60.8 103 33.0
TWI09G0429 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.0e-07 60.8 150 29.3
Cpa.g.sc121.18 Carica papaya HOM05D000004 ORTHO05D000002 1.7e-07 60.1 44 54.5
PSO782G4520 Papaver somniferum HOM05D000004 ORTHO05D000002 1.7e-07 60.1 112 33.9
SHI16403 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-07 60.1 128 31.2
TPR.G27313 Trifolium pratense HOM05D000004 ORTHO05D000002 1.7e-07 60.1 77 32.5
Atru.chr2.2548 Acer truncatum HOM05D003506 ORTHO05D004063 2.3e-07 59.7 101 32.7
Cpa.g.sc14.28 Carica papaya HOM05D000004 ORTHO05D000002 2.3e-07 59.7 43 55.8
Atru.chr4.870 Acer truncatum HOM05D000004 ORTHO05D000002 3.0e-07 59.3 102 35.3
CAN.G824.35 Capsicum annuum HOM05D000004 ORTHO05D000002 3.0e-07 59.3 72 40.3
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 3.0e-07 59.3 72 40.3
CSS0005910 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.9e-07 58.9 102 31.4
Psat1g201560 Pisum sativum HOM05D000004 ORTHO05D000002 3.9e-07 58.9 85 31.8
TWI31G1488 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 3.9e-07 58.9 74 35.1
TWI34G0287 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 3.9e-07 58.9 74 35.1
TWI38G0029 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 3.9e-07 58.9 74 35.1
TWI81G0785 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 3.9e-07 58.9 74 35.1
Ah.03g143850 Amaranthus hybridus HOM05D000004 ORTHO05D000002 5.0e-07 58.5 79 38.0
Lalb_Chr06g0168691 Lupinus albus HOM05D000004 ORTHO05D000002 5.0e-07 58.5 120 28.3
RcHm_v2.0_Chr4g0397431 Rosa chinensis HOM05D000004 ORTHO05D000002 6.6e-07 58.2 75 37.3
TWI09G0741 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 6.6e-07 58.2 75 37.3
TWI36G1188 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 6.6e-07 58.2 53 52.8
PSO063G3882 Papaver somniferum HOM05D000004 ORTHO05D000002 8.6e-07 57.8 80 32.5
Phvul.004G050550 Phaseolus vulgaris HOM05D000004 ORTHO05D000002 8.6e-07 57.8 113 30.1
Hma1.2p1_1820F.1_g304130 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.1e-06 57.4 72 40.3
RcHm_v2.0_Chr5g0021481 Rosa chinensis HOM05D000004 ORTHO05D000002 1.1e-06 57.4 89 34.8
PGSC0003DMG401028522 Solanum tuberosum HOM05D010154 ORTHO05D010293 1.1e-06 57.4 66 40.9
Atru.chr2.1912 Acer truncatum HOM05D000004 ORTHO05D000002 1.5e-06 57.0 91 34.1
Cpa.g.sc85.88 Carica papaya HOM05D008870 ORTHO05D010906 1.5e-06 57.0 89 39.3
SGA_v2.0_scaffold408G51080 Striga asiatica HOM05D000004 ORTHO05D000002 1.5e-06 57.0 63 36.5
PSO063G3333 Papaver somniferum HOM05D000004 ORTHO05D000002 1.9e-06 56.6 83 36.1
Psat1g072000 Pisum sativum HOM05D000004 ORTHO05D000002 1.9e-06 56.6 98 29.6
Psat3g181760 Pisum sativum HOM05D000004 ORTHO05D000002 1.9e-06 56.6 98 29.6
Psat3g181800 Pisum sativum HOM05D000004 ORTHO05D000002 1.9e-06 56.6 98 29.6
Cpa.g.sc4.37 Carica papaya HOM05D008870 ORTHO05D010906 2.5e-06 56.2 55 49.1
Psat4g134960 Pisum sativum HOM05D000004 ORTHO05D000002 2.5e-06 56.2 74 32.4
PGR002G0001 Punica granatum HOM05D000004 ORTHO05D000002 2.5e-06 56.2 173 27.7
RcHm_v2.0_Chr4g0414861 Rosa chinensis HOM05D000004 ORTHO05D000002 2.5e-06 56.2 59 39.0
vmacro07154 Vaccinium macrocarpon HOM05D002389 ORTHO05D003227 2.5e-06 56.2 102 29.4
Cpa.g.sc15.44 Carica papaya HOM05D000004 ORTHO05D010906 3.3e-06 55.8 78 38.5
PSO455G0227 Papaver somniferum HOM05D000004 ORTHO05D000002 3.3e-06 55.8 113 31.9
Psat2g029440 Pisum sativum HOM05D000004 ORTHO05D000002 3.3e-06 55.8 98 29.6
Sabra19G0002000 Salix brachista HOM05D000004 ORTHO05D000002 3.3e-06 55.8 118 30.5
SHI27944 Sapria himalayana HOM05D034591 ORTHO05D013281 3.3e-06 55.8 55 47.3
TPR.G11444 Trifolium pratense HOM05D000004 ORTHO05D000002 3.3e-06 55.8 71 33.8
BcaB03g14473 Brassica carinata HOM05D000004 ORTHO05D000002 4.3e-06 55.5 58 43.1
BcaC04g19062 Brassica carinata HOM05D061053 ORTHO05D000002 4.3e-06 55.5 58 43.1
Cpa.g.sc56.68 Carica papaya HOM05D008870 ORTHO05D010906 4.3e-06 55.5 63 47.6
Cpa.g.sc76.47 Carica papaya HOM05D008870 ORTHO05D010906 4.3e-06 55.5 55 52.7
ECA233G4737 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.3e-06 55.5 105 27.6
FvH4_2g19792 Fragaria vesca HOM05D000004 ORTHO05D000002 4.3e-06 55.5 75 34.7
Hma1.2p1_1220F.1_g268080 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 4.3e-06 55.5 75 33.3
Nn1g00575 Nelumbo nucifera HOM05D034836 ORTHO05D013281 4.3e-06 55.5 53 47.2
Nn5g27771 Nelumbo nucifera HOM05D000004 ORTHO05D000002 4.3e-06 55.5 157 23.6
PSO063G4254 Papaver somniferum HOM05D000004 ORTHO05D000002 4.3e-06 55.5 104 33.7
QL02p059512 Quercus lobata HOM05D000004 ORTHO05D000002 4.3e-06 55.5 129 24.8
FvH4_3g30933 Fragaria vesca HOM05D000004 ORTHO05D000002 5.6e-06 55.1 108 28.7
Hma1.2p1_0540F.1_g174670 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 5.6e-06 55.1 72 36.1
MD14G1073100 Malus domestica HOM05D001739 ORTHO05D000002 5.6e-06 55.1 72 37.5
PSO063G2480 Papaver somniferum HOM05D000004 ORTHO05D000002 5.6e-06 55.1 76 31.6
PSO675G8662 Papaver somniferum HOM05D000004 ORTHO05D000002 5.6e-06 55.1 152 25.0
PSO729G0246 Papaver somniferum HOM05D000004 ORTHO05D000002 5.6e-06 55.1 55 41.8
Sabra16G0137300 Salix brachista HOM05D000004 ORTHO05D000002 5.6e-06 55.1 119 31.9
SHI44582 Sapria himalayana HOM05D000004 ORTHO05D000002 5.6e-06 55.1 54 40.7
Sopen10g028470 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-06 55.1 85 30.6
TWI39G0003 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 5.6e-06 55.1 69 37.7
Atru.chr1.2388 Acer truncatum HOM05D000004 ORTHO05D000002 7.3e-06 54.7 79 35.4
FvH4_6g20641 Fragaria vesca HOM05D000004 ORTHO05D000002 7.3e-06 54.7 75 30.7
Psat3g025360 Pisum sativum HOM05D000004 ORTHO05D000002 7.3e-06 54.7 77 31.2
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 7.3e-06 54.7 45 46.7
RcHm_v2.0_Chr3g0451501 Rosa chinensis HOM05D016257 ORTHO05D000002 7.3e-06 54.7 75 37.3
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 9.5e-06 54.3 71 39.4
PSO017G1164 Papaver somniferum HOM05D000004 ORTHO05D000002 9.5e-06 54.3 53 41.5
PSO478G0477 Papaver somniferum HOM05D000004 ORTHO05D000002 9.5e-06 54.3 84 33.3
PSO478G1373 Papaver somniferum HOM05D000004 ORTHO05D000002 9.5e-06 54.3 53 39.6
PSO782G3890 Papaver somniferum HOM05D000004 ORTHO05D000002 9.5e-06 54.3 101 31.7
Psat5g069760 Pisum sativum HOM05D000004 ORTHO05D000002 9.5e-06 54.3 76 35.5
Sabra07G0076600 Salix brachista HOM05D000004 ORTHO05D000002 9.5e-06 54.3 113 32.7


User provided reference genes

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