Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.6e-67 259.2 125 100.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 9.4e-44 180.3 125 71.2
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.6e-43 178.3 125 71.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.2e-42 174.5 124 72.6
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 6.8e-42 174.1 125 68.8
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.6e-41 172.2 120 73.3
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 5.7e-41 171.0 123 70.7
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 7.5e-41 170.6 125 68.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 4.8e-40 167.9 125 68.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 6.3e-40 167.5 115 70.4
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 6.3e-40 167.5 124 69.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 8.3e-40 167.2 125 66.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.1e-39 166.8 123 68.3
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.8e-39 166.0 123 69.1
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.1e-39 165.2 123 68.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 7.0e-39 164.1 117 70.1
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.6e-38 162.9 126 66.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.7e-38 160.6 118 69.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 7.7e-38 160.6 118 69.5
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.0e-37 160.2 118 67.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.3e-37 159.8 126 66.7
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.7e-37 159.5 124 67.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.9e-37 158.7 118 68.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.9e-37 158.7 122 67.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.0e-37 157.9 124 67.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 5.0e-37 157.9 126 65.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 8.6e-37 157.1 121 68.6
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.5e-36 156.4 126 65.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.6e-35 152.9 118 66.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.6e-35 152.9 118 66.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.8e-35 152.1 125 61.6
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 3.6e-35 151.8 126 65.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.8e-34 149.4 124 64.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.2e-34 147.9 118 65.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.0e-33 146.0 123 61.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-33 144.4 122 63.9
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 2.8e-32 142.1 123 62.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 3.7e-32 141.7 123 62.6
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 3.7e-32 141.7 123 61.0
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 3.7e-32 141.7 123 61.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 6.3e-32 141.0 111 64.9
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.1e-31 140.2 123 61.8
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-31 139.0 124 61.3
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.4e-31 139.0 124 61.3
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.4e-31 137.9 124 61.3
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.5e-30 135.2 111 61.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 5.9e-30 134.4 124 60.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.3e-29 133.3 124 60.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-29 132.9 126 60.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.3e-29 132.5 125 57.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.9e-29 132.1 122 60.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 5.0e-29 131.3 125 57.6
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.6e-29 131.0 123 57.7
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 6.6e-29 131.0 123 57.7
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 8.6e-29 130.6 122 59.0
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.1e-28 130.2 122 58.2
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.5e-28 129.8 127 60.6
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.5e-28 129.8 126 58.7
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.9e-28 129.4 123 56.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.5e-28 129.0 125 58.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.3e-28 128.6 123 58.5
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.6e-28 127.9 124 58.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 9.5e-28 127.1 118 58.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.1e-27 125.9 122 59.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.1e-27 125.9 124 58.1
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.8e-27 125.6 124 58.1
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.7e-27 124.8 108 60.2
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 6.1e-27 124.4 123 56.1
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.3e-26 122.5 123 55.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.3e-26 122.5 123 55.3
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.0e-26 121.7 117 56.4
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.8e-26 120.9 114 57.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 6.8e-26 120.9 126 54.8
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 8.9e-26 120.6 113 57.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 8.9e-26 120.6 89 67.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.9e-26 120.6 114 57.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-25 120.2 123 56.1
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.6e-25 119.0 120 55.8
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.4e-25 118.6 70 77.1
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 3.4e-25 118.6 125 52.8
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 5.8e-25 117.9 88 68.2
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.8e-25 117.1 81 69.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.3e-24 116.7 123 56.9
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.2e-24 115.9 119 54.6
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.7e-24 115.2 118 56.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.7e-24 115.2 72 72.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.7e-24 115.2 110 56.4
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 6.4e-24 114.4 100 61.0
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 8.3e-24 114.0 126 51.6
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-23 113.6 86 65.1
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-23 113.6 123 53.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.9e-23 112.8 71 76.1
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.4e-23 112.5 125 51.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.2e-23 112.1 93 61.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.1e-23 111.7 115 49.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 4.1e-23 111.7 92 64.1
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 4.1e-23 111.7 122 54.9
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 7.0e-23 110.9 108 53.7
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 9.2e-23 110.5 84 67.9
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.0e-22 109.4 124 51.6
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.0e-22 109.4 102 56.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.7e-22 109.0 138 49.3
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.5e-22 108.6 126 53.2
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.6e-22 108.2 138 49.3
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 4.6e-22 108.2 123 51.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.0e-22 107.8 104 57.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 6.0e-22 107.8 69 69.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 6.0e-22 107.8 102 55.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 7.8e-22 107.5 121 52.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.0e-21 107.1 126 53.2
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.0e-21 107.1 133 48.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.3e-21 106.7 85 63.5
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.7e-21 106.3 126 52.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.7e-21 106.3 124 52.4
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.7e-21 106.3 79 64.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-21 106.3 74 67.6
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.3e-21 105.9 96 57.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.3e-21 105.9 62 74.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 8.6e-21 104.0 121 52.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 8.6e-21 104.0 81 64.2
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.1e-20 103.6 81 65.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-20 103.6 124 51.6
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-20 103.6 69 71.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.9e-20 102.8 122 46.7
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.9e-20 102.8 122 46.7
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.9e-20 102.8 122 46.7
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.9e-20 102.8 62 74.2
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.5e-20 102.4 88 62.5
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.3e-20 102.1 60 78.3
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.5e-20 100.5 130 47.7
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-19 100.1 77 62.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.2e-19 100.1 88 53.4
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.6e-19 99.8 103 53.4
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-19 99.4 104 48.1
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.6e-19 98.6 62 69.4
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.7e-19 98.2 69 63.8
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 4.7e-19 98.2 120 42.5
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.7e-19 98.2 74 64.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.2e-19 97.8 90 56.7
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-18 96.7 103 46.6
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.4e-18 96.7 103 46.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.4e-18 96.7 80 58.8
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.4e-18 96.7 57 73.7
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.1e-18 95.5 69 66.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.2e-17 93.6 90 54.4
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.0e-17 92.8 75 62.7
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-17 92.4 76 59.2
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.4e-17 92.0 79 57.0
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 5.8e-17 91.3 88 51.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-17 90.5 68 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.2e-16 89.4 125 45.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.9e-16 89.0 87 52.9
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 5.4e-15 84.7 90 54.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.2e-14 83.6 103 51.5
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-14 82.4 120 43.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.6e-14 81.6 62 59.7
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.3e-13 79.3 47 74.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 3.9e-13 78.6 115 40.0


User provided reference genes

Program Settings