Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.3e-229 798.1 688 100.0
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 3.3e-175 619.4 689 77.2
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.3e-173 612.1 688 79.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 7.7e-172 608.2 689 74.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-169 600.9 687 81.7
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.4e-167 592.8 709 78.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.1e-165 586.3 689 79.1
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.1e-165 585.9 689 81.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.7e-164 583.2 689 80.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 5.9e-164 582.0 690 82.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-163 581.3 685 73.3
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-163 580.9 688 79.4
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-163 580.1 690 77.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.9e-163 579.7 686 81.3
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.5e-162 577.4 696 66.2
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.2e-162 575.1 690 79.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.2e-161 574.3 689 80.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 8.9e-160 568.2 686 76.4
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.4e-159 565.8 686 78.4
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 5.7e-159 565.5 726 67.4
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.9e-158 562.4 688 76.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 4.9e-158 562.4 685 69.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.1e-157 561.2 689 78.5
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.7e-155 553.9 689 78.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.9e-155 553.1 688 74.9
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.6e-155 552.0 689 78.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.6e-155 552.0 690 70.1
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.5e-154 550.1 754 69.5
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 4.3e-154 549.3 685 75.6
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.8e-153 546.6 690 77.0
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.1e-153 545.4 685 75.5
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-151 541.2 687 76.1
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.2e-151 541.2 686 71.3
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.4e-151 539.3 689 76.1
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 4.4e-151 539.3 688 75.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.4e-151 539.3 686 77.7
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 4.4e-151 539.3 688 73.7
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 7.5e-151 538.5 687 75.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-150 537.7 688 68.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.7e-150 537.3 689 77.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.9e-150 536.6 689 72.3
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.7e-150 536.2 688 77.8
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.4e-149 534.3 691 73.7
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.0e-148 530.4 722 69.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.7e-148 530.0 689 75.6
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 4.6e-148 529.3 688 73.3
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.6e-148 529.3 689 75.2
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.0e-148 528.9 688 70.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-147 528.1 689 64.7
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.3e-147 526.9 685 74.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.0e-147 526.6 685 77.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.3e-146 523.1 689 75.8
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.3e-146 521.9 687 68.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.3e-146 521.9 689 75.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.1e-145 520.4 687 70.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 3.6e-145 519.6 685 74.3
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.6e-145 519.6 686 73.5
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.6e-145 519.6 683 73.2
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.8e-144 517.3 688 73.3
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.3e-144 516.9 684 70.3
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 6.8e-144 515.4 688 73.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 8.9e-144 515.0 689 74.7
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.2e-143 514.6 685 75.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 7.5e-143 511.9 688 74.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.7e-142 510.8 688 75.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 3.7e-142 509.6 688 71.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 6.4e-142 508.8 682 62.0
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.4e-142 508.8 688 71.4
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.4e-141 507.7 688 68.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.4e-141 506.9 603 81.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.1e-141 506.1 688 68.8
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.4e-141 505.8 685 73.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.4e-141 505.8 686 65.3
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.0e-141 505.4 688 72.5
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-140 504.6 688 75.1
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.1e-140 503.8 688 71.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.3e-139 501.1 686 71.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-139 500.7 662 74.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.9e-139 499.6 686 72.7
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 6.6e-139 498.8 688 73.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 8.6e-139 498.4 684 72.1
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.1e-138 498.0 672 71.1
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.3e-138 496.5 687 71.0
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-138 496.5 685 76.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 3.3e-138 496.5 685 76.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 5.6e-138 495.7 685 75.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 9.5e-138 495.0 685 74.9
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-137 494.2 685 76.2
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-137 494.2 685 76.2
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 2.8e-137 493.4 684 73.7
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 4.7e-137 492.7 685 76.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 4.0e-136 489.6 685 73.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.2e-136 489.2 687 73.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.2e-136 489.2 681 75.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.6e-135 486.9 684 73.2
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.2e-134 483.8 686 72.6
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.7e-134 483.0 688 66.1
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 8.3e-134 481.9 690 67.5
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.1e-133 481.5 685 74.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.4e-133 481.1 689 73.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.2e-133 479.9 685 73.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.2e-133 479.9 689 67.2
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 7.1e-133 478.8 649 70.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.1e-133 478.8 683 75.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 7.1e-133 478.8 700 60.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 7.8e-132 475.3 690 70.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.3e-131 473.8 684 70.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 5.6e-130 469.2 686 72.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 9.5e-130 468.4 662 71.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-129 468.0 686 67.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.8e-129 466.8 652 76.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 4.7e-129 466.1 685 71.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.9e-126 456.8 685 65.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.4e-126 455.3 703 65.1
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 8.4e-126 455.3 689 70.7
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.4e-125 454.5 642 61.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.9e-125 454.1 680 64.9
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 3.2e-125 453.4 600 72.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 7.1e-125 452.2 685 64.2
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-124 451.1 687 71.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.3e-123 448.0 681 69.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.5e-122 443.7 684 68.6
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 5.6e-122 442.6 685 63.1
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 5.6e-122 442.6 685 63.1
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.6e-121 439.9 684 68.1
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-120 438.3 661 71.0
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-120 438.0 684 65.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.4e-120 438.0 617 76.0
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.4e-119 433.0 684 65.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.9e-118 430.3 619 63.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 8.4e-118 428.7 688 69.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.4e-117 427.2 683 63.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 5.4e-117 426.0 687 63.2
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.7e-115 421.0 684 60.2
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.8e-113 413.7 313 69.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-112 411.4 687 62.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-109 401.7 683 62.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.8e-107 394.4 696 62.9
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.7e-105 386.7 688 63.5
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-105 386.0 421 61.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.9e-101 374.4 684 63.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.6e-100 369.8 687 57.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.8e-99 367.9 614 59.9
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.0e-96 355.5 645 69.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.2e-95 355.1 514 80.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-84 317.4 722 47.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.0e-83 313.9 771 48.6
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 2.9e-78 297.4 519 67.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.8e-78 297.0 271 69.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.2e-77 293.9 620 54.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 4.2e-77 293.5 664 45.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-76 290.8 710 55.4
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 4.7e-76 290.0 683 49.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-75 287.7 780 45.8
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.5e-70 269.6 161 82.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.7e-68 263.5 789 45.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.7e-65 253.8 538 53.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.2e-55 222.2 815 45.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.5e-53 215.3 231 53.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.5e-53 214.5 470 59.4
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.5e-42 178.7 482 60.2
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.7e-39 167.9 313 47.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.0e-35 156.0 284 71.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.7e-31 141.4 88 80.7
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 6.0e-31 140.2 276 75.4
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.5e-29 134.8 79 81.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.3e-29 134.0 119 60.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.6e-26 124.8 190 62.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.9e-25 120.6 278 44.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 7.3e-21 106.7 173 44.5
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 7.3e-13 80.1 192 31.2
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.8e-12 78.2 226 78.8


User provided reference genes

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