Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 5.6e-56 220.7 112 100.0
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.9e-33 144.8 106 70.8
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 1.5e-32 142.9 103 68.9
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.5e-32 142.9 112 69.6
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 5.7e-32 141.0 112 67.0
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.3e-31 139.8 110 67.3
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.7e-31 139.4 111 69.4
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.1e-30 136.7 110 65.5
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 2.4e-30 135.6 113 68.1
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 5.3e-30 134.4 110 64.5
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 5.3e-30 134.4 112 65.2
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.5e-29 132.9 112 60.7
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 7.7e-29 130.6 103 67.0
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.0e-28 130.2 111 63.1
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.3e-28 129.8 112 59.8
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 3.8e-28 128.3 103 67.0
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 5.0e-28 127.9 103 67.0
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 6.5e-28 127.5 105 61.9
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.4e-27 126.3 108 63.9
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-27 126.3 112 61.6
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 2.5e-27 125.6 112 58.9
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 3.2e-27 125.2 110 57.3
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.2e-27 124.8 110 59.1
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 9.4e-27 123.6 99 66.7
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.2e-26 123.2 111 59.5
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 2.1e-26 122.5 110 58.2
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 2.1e-26 122.5 110 58.2
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 2.1e-26 122.5 110 58.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 2.7e-26 122.1 104 63.5
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 2.7e-26 122.1 109 58.7
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.0e-25 120.2 110 57.3
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.4e-25 119.8 108 58.3
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 1.4e-25 119.8 112 55.4
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.4e-25 119.8 107 60.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 2.3e-25 119.0 110 56.4
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 5.2e-25 117.9 112 58.0
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 2.6e-24 115.5 112 60.7
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 2.6e-24 115.5 101 57.4
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 3.3e-24 115.2 108 61.1
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 3.3e-24 115.2 114 56.1
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 9.7e-24 113.6 104 60.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.2e-23 112.5 103 59.2
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 2.2e-23 112.5 103 59.2
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 2.8e-23 112.1 105 57.1
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 2.8e-23 112.1 105 57.1
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.8e-23 112.1 104 54.8
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 3.7e-23 111.7 103 56.3
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 3.7e-23 111.7 112 55.4
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 8.2e-23 110.5 102 60.8
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.1e-22 110.2 113 54.9
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.1e-22 110.2 91 62.6
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.4e-22 109.8 90 64.4
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 1.4e-22 109.8 112 55.4
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.4e-22 109.8 112 61.6
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 7.0e-22 107.5 101 58.4
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 7.0e-22 107.5 112 52.7
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 5.9e-21 104.4 107 54.2
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 7.7e-21 104.0 101 55.4
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.0e-20 103.6 111 46.8
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 2.9e-20 102.1 112 50.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-19 99.8 93 58.1
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 2.5e-19 99.0 112 49.1
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 3.2e-19 98.6 105 49.5
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 4.2e-19 98.2 104 53.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 4.2e-19 98.2 101 53.5
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 5.5e-19 97.8 107 54.2
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 7.2e-19 97.4 105 49.5
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 7.2e-19 97.4 105 49.5
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 9.4e-19 97.1 109 47.7
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.2e-18 96.7 102 50.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.2e-18 96.7 102 50.0
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 2.1e-18 95.9 102 50.0
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 3.6e-18 95.1 100 51.0
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 3.6e-18 95.1 99 49.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.0e-17 93.6 104 47.1
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.8e-17 92.8 99 47.5
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.0e-17 92.0 105 47.6
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.5e-16 89.7 106 47.2
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-16 89.7 99 52.5
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.5e-16 89.7 102 49.0
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.5e-16 89.7 100 53.0
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.5e-16 89.7 100 54.0
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 2.0e-16 89.4 113 47.8
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.6e-16 89.0 111 46.8
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 1.3e-15 86.7 103 49.5
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 2.2e-15 85.9 103 47.6
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 8.2e-15 84.0 77 62.3
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 1.1e-14 83.6 105 47.6
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 7.0e-14 80.9 102 44.1
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 3.5e-13 78.6 100 45.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 5.9e-13 77.8 100 44.0
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 1.0e-12 77.0 107 45.8
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 3.8e-12 75.1 100 43.0
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.5e-11 73.2 77 51.9
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.9e-11 72.8 68 58.8
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 3.2e-11 72.0 145 36.6
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.7e-10 68.2 72 54.2
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 3.4e-08 62.0 51 58.8
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 2.2e-07 59.3 41 65.9
MD09G1181800 Malus domestica HOM05D008318 ORTHO05D010481 1.1e-06 57.0 119 34.5


User provided reference genes

Program Settings