Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc125.45 Carica papaya HOM05D002508 ORTHO05D005724 1.4e-88 329.7 186 100.0
Cpa.g.c29343.2 Carica papaya HOM05D002508 ORTHO05D005724 2.0e-82 309.3 179 97.8
COL.COLO4_12342 Corchorus olitorius HOM05D002508 ORTHO05D005724 3.5e-50 202.2 181 66.9
Manes.10G136300 Manihot esculenta HOM05D002508 ORTHO05D005724 5.9e-50 201.4 184 66.8
Manes.07G010300 Manihot esculenta HOM05D002508 ORTHO05D005724 3.6e-47 192.2 185 64.9
Cfa022637 Carpinus fangiana HOM05D002508 ORTHO05D005724 6.1e-47 191.4 189 65.6
Haze_03134 Corylus avellana HOM05D002508 ORTHO05D005724 3.9e-46 188.7 209 61.7
Duzib133G0102 Durio zibethinus HOM05D002508 ORTHO05D005724 7.4e-45 184.5 182 63.2
Prupe.2G022100 Prunus persica HOM05D002508 ORTHO05D005724 8.2e-44 181.0 186 59.7
Potri.001G262400 Populus trichocarpa HOM05D002508 ORTHO05D005724 2.4e-43 179.5 187 63.1
CiPaw.14G002800 Carya illinoinensis HOM05D002508 ORTHO05D005724 4.1e-43 178.7 186 59.7
Atru.chr11.2577 Acer truncatum HOM05D002508 ORTHO05D005724 5.3e-43 178.3 194 58.2
Sabra16G0160900 Salix brachista HOM05D002508 ORTHO05D005724 5.3e-43 178.3 180 63.3
Thecc.01G406900 Theobroma cacao HOM05D002508 ORTHO05D005724 1.2e-42 177.2 183 66.7
Haze_03137 Corylus avellana HOM05D002508 ORTHO05D005724 1.6e-42 176.8 233 54.9
Dinv43411 Davidia involucrata HOM05D002508 ORTHO05D005724 1.6e-42 176.8 177 61.0
Ciclev10031877m.g Citrus clementina HOM05D002508 ORTHO05D005724 7.7e-42 174.5 196 59.2
Gorai.004G170500 Gossypium raimondii HOM05D002508 ORTHO05D005724 7.7e-42 174.5 186 65.6
MD02G1302200 Malus domestica HOM05D002508 ORTHO05D005724 2.9e-41 172.6 185 58.4
Duzib138G1745 Durio zibethinus HOM05D002508 ORTHO05D005724 3.8e-41 172.2 183 66.1
Gohir.D08G163600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 6.5e-41 171.4 186 65.1
Gohir.A08G142600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 1.5e-40 170.2 186 64.5
Hma1.2p1_0685F.1_g203160 Hydrangea macrophylla HOM05D002508 ORTHO05D005724 3.2e-40 169.1 187 59.4
MD02G1302000 Malus domestica HOM05D002508 ORTHO05D005724 5.5e-40 168.3 183 63.4
FvH4_7g01650 Fragaria vesca HOM05D002508 ORTHO05D005724 1.2e-39 167.2 180 56.7
Nn7g36294 Nelumbo nucifera HOM05D002508 ORTHO05D005724 1.2e-39 167.2 178 60.7
TWI09G0847 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 1.6e-39 166.8 182 61.5
FAN06G1664 Fragaria x ananassa HOM05D002508 ORTHO05D005724 6.1e-39 164.9 180 56.1
QL04p009835 Quercus lobata HOM05D002508 ORTHO05D005724 8.0e-39 164.5 194 55.7
FAN03G0396 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.4e-38 163.7 183 56.8
FAN03G2859 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.4e-38 163.7 183 56.8
CSS0027034 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D005724 6.7e-38 161.4 178 59.0
FAN03G2253 Fragaria x ananassa HOM05D002508 ORTHO05D005724 8.8e-38 161.0 181 56.9
Sabra09G0041800 Salix brachista HOM05D002508 ORTHO05D005724 1.2e-37 160.6 179 62.0
arahy.Tifrunner.gnm1.ann1.9J7RGN Arachis hypogaea HOM05D002508 ORTHO05D005724 4.4e-37 158.7 190 52.1
FAN01G2421 Fragaria x ananassa HOM05D002508 ORTHO05D005724 4.4e-37 158.7 181 55.8
PGR031G2824 Punica granatum HOM05D002508 ORTHO05D005724 9.7e-37 157.5 189 58.2
THA.LOC104823029 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 1.3e-36 157.1 180 57.8
Ah.10g038620 Amaranthus hybridus HOM05D002508 ORTHO05D005724 2.2e-36 156.4 187 57.2
RcHm_v2.0_Chr1g0317921 Rosa chinensis HOM05D002508 ORTHO05D005724 2.2e-36 156.4 185 56.2
arahy.Tifrunner.gnm1.ann1.7AZW9Z Arachis hypogaea HOM05D002508 ORTHO05D005724 4.8e-36 155.2 187 51.9
CsaV3_7G030740 Cucumis sativus L. HOM05D002508 ORTHO05D005724 4.8e-36 155.2 186 57.5
Sed0022327 Sechium edule HOM05D002508 ORTHO05D005724 1.1e-35 154.1 188 56.9
Glyma.09G227200 Glycine max HOM05D002508 ORTHO05D005724 1.4e-35 153.7 182 53.8
Sed0007802 Sechium edule HOM05D002508 ORTHO05D005724 1.8e-35 153.3 162 60.5
FAN10G0515 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-35 152.9 179 54.7
CARHR291480 Cardamine hirsuta HOM05D002508 ORTHO05D005724 5.3e-35 151.8 183 57.9
VMungo1127G1573 Vigna mungo HOM05D002508 ORTHO05D005724 5.3e-35 151.8 186 52.7
Potri.009G057100 Populus trichocarpa HOM05D002508 ORTHO05D005724 7.0e-35 151.4 179 59.2
AT3G63490 Arabidopsis thaliana HOM05D002508 ORTHO05D005724 9.1e-35 151.0 181 55.8
Phvul.011G011500 Phaseolus vulgaris HOM05D002508 ORTHO05D005724 1.2e-34 150.6 187 54.0
AUR62009416 Chenopodium quinoa HOM05D002508 ORTHO05D005724 2.0e-34 149.8 178 52.8
THA.LOC104817578 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 3.5e-34 149.1 180 61.1
TWI53G1933 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 3.5e-34 149.1 181 55.2
Oeu027379.3 Olea europaea HOM05D002508 ORTHO05D005724 4.5e-34 148.7 187 52.4
Sp5g00070 Schrenkiella parvula HOM05D002508 ORTHO05D005724 4.5e-34 148.7 185 56.2
ECA238G3317 Erigeron canadensis HOM05D002508 ORTHO05D005724 7.7e-34 147.9 178 55.6
Sed0025684 Sechium edule HOM05D002508 ORTHO05D005724 1.0e-33 147.5 187 58.8
AUR62023093 Chenopodium quinoa HOM05D002508 ORTHO05D005724 1.7e-33 146.7 179 57.0
EL10Ac2g04366 Beta vulgaris HOM05D002508 ORTHO05D005724 2.2e-33 146.4 183 53.6
MD07G1022000 Malus domestica HOM05D002508 ORTHO05D005724 2.2e-33 146.4 182 57.7
Aa31LG10G17360 Aethionema arabicum HOM05D002508 ORTHO05D005724 3.8e-33 145.6 186 58.6
HanXRQChr14g0439821 Helianthus annuus HOM05D002508 ORTHO05D005724 1.1e-32 144.1 180 56.1
ClCG10G012180 Citrullus lanatus HOM05D002508 ORTHO05D005724 1.5e-32 143.7 189 58.7
Nitab4.5_0000707g0020 Nicotiana tabacum HOM05D002508 ORTHO05D005724 2.5e-32 142.9 181 53.6
Nitab4.5_0002388g0060 Nicotiana tabacum HOM05D002508 ORTHO05D005724 2.5e-32 142.9 181 53.6
CANSAT80G0809 Cannabis sativa HOM05D002508 ORTHO05D005724 4.2e-32 142.1 196 58.2
CsaV3_3G031960 Cucumis sativus L. HOM05D002508 ORTHO05D005724 4.2e-32 142.1 186 59.1
Glyma.12G009600 Glycine max HOM05D002508 ORTHO05D005724 9.4e-32 141.0 186 54.8
Rhsim01G0126900 Rhododendron simsii HOM05D002508 ORTHO05D005724 9.4e-32 141.0 188 51.1
Solyc01g087730.4 Solanum lycopersicum HOM05D002508 ORTHO05D005724 9.4e-32 141.0 179 54.2
Sopen01g034680 Solanum pennellii HOM05D002508 ORTHO05D005724 9.4e-32 141.0 179 54.2
AL5G46350 Arabidopsis lyrata HOM05D002508 ORTHO05D005724 1.6e-31 140.2 183 53.0
TAR633G0895 Trochodendron aralioides HOM05D002508 ORTHO05D005724 2.1e-31 139.8 186 52.7
TAR633G1571 Trochodendron aralioides HOM05D002508 ORTHO05D005724 2.1e-31 139.8 186 52.7
Cc02_g28550 Coffea canephora HOM05D002508 ORTHO05D005724 2.3e-30 136.3 206 49.0
CSS0049958 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D005724 4.0e-30 135.6 179 50.8
SGA_v2.0_scaffold4G02496 Striga asiatica HOM05D002508 ORTHO05D005724 8.8e-30 134.4 189 50.8
Carub.0005s3010 Capsella rubella HOM05D002508 ORTHO05D005724 1.5e-29 133.7 181 56.4
vmacro21196 Vaccinium macrocarpon HOM05D002508 ORTHO05D005724 1.5e-29 133.7 190 48.9
PGSC0003DMG400006846 Solanum tuberosum HOM05D002508 ORTHO05D005724 2.6e-29 132.9 182 52.2
Lsat_1_v5_gn_2_60700 Lactuca sativa HOM05D002508 ORTHO05D005724 3.4e-29 132.5 188 53.7
unitig_0.g1394 Utricularia gibba HOM05D002508 ORTHO05D005724 4.4e-29 132.1 186 51.6
CDE04G1509 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 5.7e-29 131.7 190 50.0
Ca_20460_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 7.5e-29 131.3 181 50.3
Ca_30001_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 7.5e-29 131.3 181 50.3
DCAR_029704 Daucus carota HOM05D002508 ORTHO05D005724 7.5e-29 131.3 185 50.3
Sc11g0009060 Simmondsia chinensis HOM05D002508 ORTHO05D005724 7.5e-29 131.3 73 89.0
Aqoxy1G00328 Aquilegia oxysepala HOM05D002508 ORTHO05D005724 9.8e-29 131.0 189 49.2
Thhalv10006062m.g Eutrema salsugineum HOM05D002508 ORTHO05D005724 1.3e-28 130.6 186 58.1
BcaB02g08057 Brassica carinata HOM05D002508 ORTHO05D005724 2.2e-28 129.8 181 56.9
A04p00070 Brassica napus HOM05D002508 ORTHO05D005724 2.2e-28 129.8 182 58.2
BraA04t15727Z Brassica rapa HOM05D002508 ORTHO05D005724 2.2e-28 129.8 182 58.2
Migut.B01269 Erythranthe guttata HOM05D002508 ORTHO05D005724 2.2e-28 129.8 184 53.8
Lj3g0003136 Lotus japonicus HOM05D002508 ORTHO05D005724 4.8e-28 128.6 183 50.8
MELO3C023997.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.1e-27 127.5 161 60.2
ATR0320G017 Amborella trichopoda HOM05D002508 ORTHO05D005724 2.4e-27 126.3 104 66.3
GSVIVG01032196001 Vitis vinifera HOM05D002508 ORTHO05D005724 2.4e-27 126.3 181 49.7
Medtr0059s0060 Medicago truncatula HOM05D002508 ORTHO05D005724 4.1e-27 125.6 184 51.6
SalBow5G1388 Salvia bowleyana HOM05D002508 ORTHO05D005724 4.1e-27 125.6 108 66.7
SalBow5G5543 Salvia bowleyana HOM05D002508 ORTHO05D005724 4.1e-27 125.6 108 66.7
Peaxi162Scf00694g00429 Petunia axillaris HOM05D002508 ORTHO05D005724 5.4e-27 125.2 181 49.2
Lalb_Chr03g0024101 Lupinus albus HOM05D002508 ORTHO05D005724 2.0e-26 123.2 111 62.2
PSO339G4165 Papaver somniferum HOM05D002508 ORTHO05D005724 2.0e-26 123.2 74 81.1
C04p29830 Brassica napus HOM05D002508 ORTHO05D005724 2.7e-26 122.9 182 56.0
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 2.7e-26 122.9 182 56.0
unitig_61.g26459 Utricularia gibba HOM05D002508 ORTHO05D005724 4.5e-26 122.1 110 69.1
Os05g0388500 Oryza sativa ssp. japonica HOM05D002508 ORTHO05D005724 5.9e-26 121.7 72 83.3
Psat7g200640 Pisum sativum HOM05D002508 ORTHO05D005724 5.9e-26 121.7 166 50.6
PSO384G1180 Papaver somniferum HOM05D002508 ORTHO05D005724 7.7e-26 121.3 205 42.4
Zm00001eb287080 Zea mays HOM05D002508 ORTHO05D005724 7.7e-26 121.3 72 84.7
Eucgr.G03333 Eucalyptus grandis HOM05D002508 ORTHO05D005724 1.0e-25 120.9 72 84.7
MSTRG.20562 Avicennia marina HOM05D002508 ORTHO05D005724 1.3e-25 120.6 68 89.7
BcaC02g10355 Brassica carinata HOM05D002508 ORTHO05D005724 1.3e-25 120.6 182 55.5
CDE02G4361 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 1.3e-25 120.6 105 66.7
MBI19_g19507_MAGBIO Magnolia biondii HOM05D002508 ORTHO05D005724 1.5e-24 117.1 180 45.0
SEGI_22662 Sequoiadendron giganteum HOM05D002508 ORTHO05D005724 4.2e-24 115.5 172 49.4
TPR.G30166 Trifolium pratense HOM05D002508 ORTHO05D005724 2.1e-23 113.2 131 61.1
Lj7A576T82 Lonicera japonica HOM05D002508 ORTHO05D005724 2.8e-23 112.8 62 90.3
Hund14183 Selenicereus undatus HOM05D002508 ORTHO05D005724 1.8e-22 110.2 182 51.1
AagrBONN_evm.TU.Sc2ySwM_228.5151 Anthoceros agrestis HOM05D002508 ORTHO05D005724 6.8e-22 108.2 112 56.2
Glyma.15G235200 Glycine max HOM05D002508 ORTHO05D005724 1.5e-21 107.1 72 75.0
Nn2g15221 Nelumbo nucifera HOM05D002508 ORTHO05D005724 3.4e-21 105.9 61 85.2
ClCG09G004400 Citrullus lanatus HOM05D002508 ORTHO05D005724 5.7e-21 105.1 163 50.3
SMO353G0403 Selaginella moellendorffii HOM05D002508 ORTHO05D005724 7.5e-21 104.8 134 48.5
Pp3c23_7820 Physcomitrium patens HOM05D002508 ORTHO05D005724 1.7e-20 103.6 116 56.0
Pp3c24_9740 Physcomitrium patens HOM05D002508 ORTHO05D005724 2.8e-20 102.8 176 42.6
FAN10G3115 Fragaria x ananassa HOM05D002508 ORTHO05D005724 5.4e-19 98.6 154 47.4
CBR_g8929 Chara braunii HOM05D002508 ORTHO05D005724 7.8e-18 94.7 67 67.2
Mapoly0043s0143 Marchantia polymorpha HOM05D002508 ORTHO05D005724 1.5e-16 90.5 65 67.7
MELO3C000754.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.5e-13 80.5 44 86.4
Dinv09310 Davidia involucrata HOM05D002508 ORTHO05D005724 7.0e-11 71.6 125 48.0
CDE02G0028 Ceratophyllum demersum HOM05D002508 ORTHO05D000608 3.5e-10 69.3 103 49.5
Cre02.g088900 Chlamydomonas reinhardtii HOM05D002508 ORTHO05D005724 3.3e-08 62.8 68 48.5
Actinidia19422 Actinidia chinensis HOM05D002508 ORTHO05D005724 2.1e-07 60.1 31 87.1


User provided reference genes

Program Settings