Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.9e-256 888.6 447 100.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-196 689.9 456 81.4
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 7.5e-184 647.5 457 75.1
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 9.2e-158 560.8 454 65.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 3.3e-155 552.4 454 64.3
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.6e-154 550.1 454 63.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.1e-154 549.7 458 63.3
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.1e-154 549.7 463 63.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.2e-154 548.1 454 63.4
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.8e-153 546.6 454 63.7
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.8e-153 544.7 465 62.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.5e-152 543.5 454 63.4
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.6e-152 542.7 454 63.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 5.4e-150 535.0 454 62.8
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.5e-149 532.3 454 62.1
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.6e-149 531.9 440 67.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 4.6e-149 531.9 454 61.7
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 7.8e-149 531.2 454 62.1
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.0e-148 530.8 454 61.9
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.3e-148 529.6 455 62.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 6.6e-148 528.1 454 63.0
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.9e-147 526.6 453 61.8
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.3e-147 525.8 464 61.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.2e-146 523.9 456 61.2
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.1e-146 523.1 456 61.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.7e-146 521.9 456 61.2
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.7e-146 521.9 454 60.4
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 6.2e-146 521.5 454 60.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 8.1e-146 521.2 454 62.3
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 6.8e-145 518.1 454 61.7
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 8.9e-145 517.7 457 59.7
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.4e-144 515.8 454 61.7
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.4e-144 515.8 454 61.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.4e-144 515.4 456 60.5
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.3e-143 513.8 478 59.4
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-143 513.8 462 59.7
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 6.4e-143 511.5 462 59.3
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 8.3e-143 511.1 462 60.8
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-142 510.4 459 60.3
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-142 510.0 453 59.6
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.9e-142 510.0 434 62.2
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.2e-142 509.2 454 60.4
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 9.2e-142 507.7 459 60.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 9.2e-142 507.7 454 60.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.2e-141 507.3 454 60.6
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.6e-141 505.4 454 60.6
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 7.8e-141 504.6 454 61.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.0e-140 504.2 440 62.7
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 8.6e-140 501.1 454 58.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.5e-139 499.6 460 58.9
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 4.3e-139 498.8 454 58.6
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 6.2e-138 495.0 454 57.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 6.2e-138 495.0 454 57.0
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 8.1e-138 494.6 449 58.4
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.5e-136 490.3 453 58.5
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.5e-136 490.3 467 57.0
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 2.0e-136 490.0 454 57.5
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.4e-135 484.6 462 56.7
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 4.2e-134 482.3 456 56.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 5.4e-134 481.9 454 56.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.2e-133 480.7 453 57.4
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.8e-133 478.0 452 57.7
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.3e-132 476.5 441 58.3
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 5.6e-131 471.9 454 54.6
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 5.6e-131 471.9 458 55.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 7.3e-131 471.5 454 55.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.6e-130 469.2 452 57.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 8.1e-130 468.0 542 49.4
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-129 467.2 480 54.2
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.4e-129 466.5 456 54.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 3.1e-129 466.1 453 54.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.0e-128 463.4 454 54.6
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.4e-127 458.0 452 56.4
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.7e-125 453.0 454 53.5
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 6.0e-125 451.8 454 54.8
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 6.0e-125 451.8 454 54.8
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 6.0e-125 451.8 460 52.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.8e-125 451.4 457 54.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-121 440.7 454 54.0
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.1e-121 439.5 453 53.9
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.0e-121 439.1 457 53.8
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 5.3e-121 438.7 455 52.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 6.9e-121 438.3 456 53.1
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.0e-120 436.8 474 50.8
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.6e-120 436.4 455 53.4
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.9e-118 430.3 452 53.3
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.5e-117 426.0 454 51.8
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.8e-116 423.7 456 53.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 9.6e-115 417.9 460 51.1
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-114 417.5 455 50.8
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-114 416.8 455 50.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 8.1e-114 414.8 449 51.2
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 9.0e-113 411.4 459 49.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.5e-112 410.6 447 54.1
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.6e-112 409.8 460 52.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.4e-112 409.5 469 47.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-109 401.0 461 47.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.0e-109 398.7 302 69.5
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 7.9e-109 398.3 423 52.2
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.8e-108 397.1 393 56.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-105 387.1 455 48.6
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 5.3e-105 385.6 461 47.9
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-103 378.6 465 44.1
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.7e-101 373.2 463 46.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 3.9e-100 369.4 409 48.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.7e-99 364.8 378 54.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.2e-98 363.6 328 59.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 9.0e-97 358.2 456 46.3
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.5e-96 355.9 461 45.6
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-95 354.8 362 53.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-94 350.9 445 47.9
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.4e-94 350.9 409 47.7
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 7.2e-94 348.6 463 44.5
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 9.4e-94 348.2 479 42.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-93 347.8 414 49.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-93 347.8 463 44.1
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.2e-93 347.8 465 43.4
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-92 344.4 340 55.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 3.9e-92 342.8 472 42.4
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.3e-91 339.7 312 60.3
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-89 334.0 339 56.9
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 3.4e-88 329.7 373 47.7
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.5e-88 329.3 333 53.8
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.3e-87 327.8 437 45.8
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 6.1e-85 318.9 455 42.6
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.4e-81 307.8 331 54.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.3e-81 305.8 341 47.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.6e-75 287.0 429 42.4
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.2e-69 268.1 194 68.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.3e-66 258.1 611 30.9
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.2e-60 236.1 194 56.2
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-57 227.6 187 56.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-57 227.6 275 44.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-54 217.2 332 40.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.6e-48 198.0 557 30.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.7e-48 197.2 434 32.9
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 9.8e-43 178.7 261 42.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.7e-42 176.8 100 81.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 6.4e-42 176.0 99 81.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.0e-40 171.0 99 79.8
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.0e-40 171.0 99 79.8
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.6e-40 169.9 149 60.4
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 3.9e-39 166.8 98 78.6
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.5e-38 164.1 98 77.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 4.7e-37 159.8 260 42.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.9e-36 155.6 202 42.6
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 2.9e-34 150.6 99 71.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-33 148.7 98 71.4
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.1e-33 146.0 98 67.3
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 6.2e-29 132.9 77 80.5
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-28 131.3 98 65.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.8e-28 129.4 143 53.1
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.4e-26 122.9 83 68.7
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-23 115.2 184 39.1
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.1e-20 104.0 76 59.2
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.6e-19 99.4 169 34.9
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-16 91.7 87 46.0
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 6.6e-15 86.3 66 59.1
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-14 84.7 73 58.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-12 78.6 73 54.8
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 9.9e-11 72.4 98 41.8


User provided reference genes

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