Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc123.27 Carica papaya HOM05D000350 ORTHO05D022227 8.9e-84 313.5 155 100.0
Cpa.g.sc128.6 Carica papaya HOM05D000350 ORTHO05D000228 6.0e-40 167.9 133 70.7
Cpa.g.sc101.45 Carica papaya HOM05D000350 ORTHO05D010906 1.1e-38 163.7 113 74.3
Atru.chr11.1818 Acer truncatum HOM05D000350 ORTHO05D000228 9.0e-20 100.9 109 53.2
Ciclev10031757m.g Citrus clementina HOM05D000350 ORTHO05D000228 2.0e-19 99.8 119 48.7
Duzib251G0008 Durio zibethinus HOM05D000350 ORTHO05D000228 3.8e-18 95.5 115 50.4
COL.COLO4_22986 Corchorus olitorius HOM05D000350 ORTHO05D000228 8.4e-18 94.4 120 50.8
Thecc.02G350300 Theobroma cacao HOM05D000350 ORTHO05D000228 1.9e-17 93.2 145 45.5
Duzib268G0342 Durio zibethinus HOM05D000350 ORTHO05D000228 4.2e-17 92.0 114 49.1
Oeu047018.1 Olea europaea HOM05D000350 ORTHO05D000228 7.1e-17 91.3 113 46.9
Nn3g17205 Nelumbo nucifera HOM05D000350 ORTHO05D000228 2.1e-16 89.7 107 45.8
Manes.06G093900 Manihot esculenta HOM05D000350 ORTHO05D000228 2.7e-16 89.4 132 41.7
Sed0009449 Sechium edule HOM05D000350 ORTHO05D000228 4.6e-16 88.6 128 39.8
CiPaw.11G042900 Carya illinoinensis HOM05D000350 ORTHO05D000228 6.1e-16 88.2 129 42.6
Nitab4.5_0004103g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.0e-15 87.4 119 42.0
Duzib068G0007 Durio zibethinus HOM05D000350 ORTHO05D000228 1.3e-15 87.0 130 41.5
Nn4g23130 Nelumbo nucifera HOM05D000350 ORTHO05D000228 2.3e-15 86.3 115 40.9
Manes.14G077200 Manihot esculenta HOM05D000350 ORTHO05D000228 3.0e-15 85.9 133 40.6
Sabra11G0037800 Salix brachista HOM05D000350 ORTHO05D000228 3.0e-15 85.9 112 45.5
Potri.004G046300 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.9e-15 85.5 120 40.8
Potri.011G055500 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.9e-15 85.5 112 44.6
Thecc.03G084500 Theobroma cacao HOM05D000350 ORTHO05D000228 3.9e-15 85.5 129 44.2
TAR622G0441 Trochodendron aralioides HOM05D000350 ORTHO05D000228 6.7e-15 84.7 115 43.5
PGSC0003DMG400000597 Solanum tuberosum HOM05D000350 ORTHO05D000228 8.7e-15 84.3 110 44.5
Manes.01G187000 Manihot esculenta HOM05D000350 ORTHO05D000228 1.5e-14 83.6 114 46.5
CAN.G407.118 Capsicum annuum HOM05D000350 ORTHO05D000228 1.9e-14 83.2 115 41.7
CAN.G628.26 Capsicum annuum HOM05D000350 ORTHO05D000228 1.9e-14 83.2 120 42.5
Peaxi162Scf00274g00082 Petunia axillaris HOM05D000350 ORTHO05D000228 1.9e-14 83.2 118 42.4
Aqoxy3G03354 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 2.5e-14 82.8 153 37.3
ClCG06G016250 Citrullus lanatus HOM05D000350 ORTHO05D000228 2.5e-14 82.8 125 37.6
Duzib084G1417 Durio zibethinus HOM05D000350 ORTHO05D000228 2.5e-14 82.8 124 41.9
GSVIVG01020011001 Vitis vinifera HOM05D000350 ORTHO05D000228 2.5e-14 82.8 87 51.7
Cfa018958 Carpinus fangiana HOM05D000350 ORTHO05D000228 3.3e-14 82.4 139 38.1
Solyc03g116320.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 3.3e-14 82.4 108 44.4
DCAR_016540 Daucus carota HOM05D000350 ORTHO05D000228 4.3e-14 82.0 100 48.0
Duzib205G1598 Durio zibethinus HOM05D000350 ORTHO05D000228 4.3e-14 82.0 121 43.8
TAR371G0739 Trochodendron aralioides HOM05D000350 ORTHO05D000228 5.7e-14 81.6 116 42.2
COL.COLO4_00362 Corchorus olitorius HOM05D000350 ORTHO05D000228 9.7e-14 80.9 129 45.0
Gohir.A12G176600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 9.7e-14 80.9 138 36.2
Sopen03g035250 Solanum pennellii HOM05D000350 ORTHO05D000228 9.7e-14 80.9 108 43.5
QL10p016556 Quercus lobata HOM05D000350 ORTHO05D000228 1.3e-13 80.5 125 40.8
Gohir.D12G179300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.6e-13 80.1 128 41.4
Nitab4.5_0000269g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.6e-13 80.1 108 43.5
Haze_07340 Corylus avellana HOM05D000350 ORTHO05D000228 2.8e-13 79.3 139 37.4
Gorai.N023400 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.8e-13 79.3 111 46.8
GSVIVG01008023001 Vitis vinifera HOM05D000350 ORTHO05D000228 2.8e-13 79.3 83 50.6
Atru.chr9.2266 Acer truncatum HOM05D000350 ORTHO05D000228 4.8e-13 78.6 121 40.5
Atru.chr9.2274 Acer truncatum HOM05D000350 ORTHO05D000228 4.8e-13 78.6 121 40.5
Cc04_g16910 Coffea canephora HOM05D000350 ORTHO05D000228 4.8e-13 78.6 120 40.8
Gohir.D13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.8e-13 78.6 111 45.9
Gorai.013G084500 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.8e-13 78.6 111 45.9
Lalb_Chr12g0196841 Lupinus albus HOM05D000350 ORTHO05D000228 4.8e-13 78.6 124 38.7
Lalb_Chr13g0303291 Lupinus albus HOM05D000350 ORTHO05D000228 4.8e-13 78.6 150 37.3
Cpa.g.sc1815.2 Carica papaya HOM05D000350 ORTHO05D000228 6.3e-13 78.2 122 39.3
DCAR_021524 Daucus carota HOM05D000350 ORTHO05D000228 6.3e-13 78.2 123 39.8
Duzib248G0115 Durio zibethinus HOM05D000350 ORTHO05D000228 6.3e-13 78.2 115 48.7
Gorai.008G192400 Gossypium raimondii HOM05D000350 ORTHO05D000228 6.3e-13 78.2 123 40.7
Oeu022203.1 Olea europaea HOM05D000350 ORTHO05D000228 6.3e-13 78.2 120 41.7
CiPaw.12G014100 Carya illinoinensis HOM05D000350 ORTHO05D000228 8.2e-13 77.8 129 40.3
Gohir.A13G073700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 8.2e-13 77.8 111 45.9
Gohir.D13G073900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 8.2e-13 77.8 111 45.9
Ciclev10020275m.g Citrus clementina HOM05D000350 ORTHO05D000228 1.1e-12 77.4 125 41.6
Hma1.2p1_0735F.1_g210510 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 1.4e-12 77.0 116 41.4
MSTRG.4421 Avicennia marina HOM05D000350 ORTHO05D000228 1.8e-12 76.6 126 42.1
Gorai.008G181600 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.8e-12 76.6 126 44.4
SalBow7G2673 Salvia bowleyana HOM05D000350 ORTHO05D000228 1.8e-12 76.6 120 37.5
Solyc06g070900.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.8e-12 76.6 112 42.0
Gorai.007G036800 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.4e-12 76.3 131 41.2
Nitab4.5_0001188g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.4e-12 76.3 108 41.7
PGSC0003DMG400033078 Solanum tuberosum HOM05D000350 ORTHO05D000228 3.1e-12 75.9 115 40.9
VMungo1309G1886 Vigna mungo HOM05D000350 ORTHO05D000228 3.1e-12 75.9 122 43.4
Ca_21828_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 4.1e-12 75.5 130 34.6
FAN13G3314 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.1e-12 75.5 114 41.2
Lsat_1_v5_gn_5_19421 Lactuca sativa HOM05D000350 ORTHO05D000228 5.3e-12 75.1 117 37.6
Phvul.009G188100 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 5.3e-12 75.1 122 43.4
Glyma.01G045500 Glycine max HOM05D000350 ORTHO05D000228 6.9e-12 74.7 124 41.1
TPR.G34731 Trifolium pratense HOM05D000350 ORTHO05D000228 6.9e-12 74.7 97 45.4
Gohir.A07G063900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 9.0e-12 74.3 133 39.1
Gohir.D12G168800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 9.0e-12 74.3 126 43.7
Medtr4g108370 Medicago truncatula HOM05D000350 ORTHO05D000228 9.0e-12 74.3 128 39.8
Psat4g053160 Pisum sativum HOM05D000350 ORTHO05D000228 9.0e-12 74.3 89 44.9
HanXRQChr08g0235581 Helianthus annuus HOM05D000350 ORTHO05D000228 1.2e-11 73.9 116 38.8
Sed0023822 Sechium edule HOM05D000350 ORTHO05D000228 1.5e-11 73.6 119 41.2
Sopen06g027180 Solanum pennellii HOM05D000350 ORTHO05D000228 1.5e-11 73.6 111 39.6
CiPaw.05G136800 Carya illinoinensis HOM05D000350 ORTHO05D000228 2.0e-11 73.2 122 41.8
Dinv34166 Davidia involucrata HOM05D000189 ORTHO05D000474 2.0e-11 73.2 107 44.9
Eucgr.B00471 Eucalyptus grandis HOM05D000350 ORTHO05D000228 2.0e-11 73.2 131 37.4
Glyma.04G170600 Glycine max HOM05D000350 ORTHO05D000228 2.0e-11 73.2 128 40.6
Gohir.D07G068700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.0e-11 73.2 124 39.5
Gorai.001G072200 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.0e-11 73.2 124 39.5
MELO3C017168.2 Cucumis melo HOM05D000350 ORTHO05D000228 2.6e-11 72.8 95 41.1
FAN22G1053 Fragaria x ananassa HOM05D000350 ORTHO05D000228 2.6e-11 72.8 142 35.9
Hma1.2p1_0104F.1_g050010 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 2.6e-11 72.8 123 39.0
MSTRG.23022 Avicennia marina HOM05D000350 ORTHO05D000228 3.4e-11 72.4 135 37.8
CSS0029405 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 3.4e-11 72.4 119 39.5
FvH4_5g15150 Fragaria vesca HOM05D000350 ORTHO05D000228 3.4e-11 72.4 114 40.4
FAN08G1184 Fragaria x ananassa HOM05D000350 ORTHO05D000228 3.4e-11 72.4 114 40.4
FAN18G1488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 3.4e-11 72.4 114 40.4
CsaV3_1G002280 Cucumis sativus L. HOM05D000350 ORTHO05D000228 4.5e-11 72.0 134 34.3
Manes.05G100100 Manihot esculenta HOM05D000350 ORTHO05D000228 4.5e-11 72.0 128 42.2
Gohir.A12G165700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 5.9e-11 71.6 126 42.9
Lj9C462T10 Lonicera japonica HOM05D000350 ORTHO05D000228 5.9e-11 71.6 117 41.0
arahy.Tifrunner.gnm1.ann1.6V3SWS Arachis hypogaea HOM05D000350 ORTHO05D000228 7.7e-11 71.2 138 37.0
arahy.Tifrunner.gnm1.ann1.Q9YRAB Arachis hypogaea HOM05D000350 ORTHO05D000228 7.7e-11 71.2 138 37.0
MSTRG.9632 Avicennia marina HOM05D000350 ORTHO05D000228 7.7e-11 71.2 124 37.9
CANSAT80G2208 Cannabis sativa HOM05D000350 ORTHO05D000228 7.7e-11 71.2 142 41.5
FAN04G0488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 7.7e-11 71.2 114 40.4
MBI05_g35458_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 1.0e-10 70.9 117 40.2
ClCG05G024370 Citrullus lanatus HOM05D000350 ORTHO05D000228 1.3e-10 70.5 141 38.3
Lsat_1_v5_gn_1_13200 Lactuca sativa HOM05D000350 ORTHO05D000228 1.3e-10 70.5 110 40.0
Lsat_1_v5_gn_4_107781 Lactuca sativa HOM05D000350 ORTHO05D000228 1.3e-10 70.5 104 38.5
Rhsim08G0156400 Rhododendron simsii HOM05D000350 ORTHO05D000228 1.3e-10 70.5 94 41.5
VMungo1215G0148 Vigna mungo HOM05D000350 ORTHO05D000228 1.3e-10 70.5 142 34.5
Cfa008997 Carpinus fangiana HOM05D000350 ORTHO05D000228 1.7e-10 70.1 118 44.1
FvH4_4g31520 Fragaria vesca HOM05D000350 ORTHO05D000228 1.7e-10 70.1 132 37.9
Oeu022623.1 Olea europaea HOM05D000350 ORTHO05D000228 1.7e-10 70.1 117 38.5
TWI81G0836 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.7e-10 70.1 89 47.2
SGA_v2.0_scaffold7G04072 Striga asiatica HOM05D000350 ORTHO05D000228 2.2e-10 69.7 115 42.6
FAN17G2088 Fragaria x ananassa HOM05D000350 ORTHO05D000228 2.9e-10 69.3 136 36.0
Glyma.17G099100 Glycine max HOM05D000350 ORTHO05D000228 2.9e-10 69.3 118 40.7
HanXRQChr16g0502851 Helianthus annuus HOM05D000350 ORTHO05D000228 2.9e-10 69.3 113 39.8
Dinv38694 Davidia involucrata HOM05D000018 ORTHO05D007339 3.8e-10 68.9 123 42.3
Phvul.003G190900 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 3.8e-10 68.9 142 34.5
RcHm_v2.0_Chr7g0181021 Rosa chinensis HOM05D000350 ORTHO05D000228 3.8e-10 68.9 113 40.7
MELO3C012086.2 Cucumis melo HOM05D000350 ORTHO05D000228 5.0e-10 68.6 138 37.0
MD13G1073500 Malus domestica HOM05D000350 ORTHO05D000228 5.0e-10 68.6 127 37.0
Oeu045408.1 Olea europaea HOM05D000350 ORTHO05D000228 5.0e-10 68.6 104 42.3
Aqoxy3G00680 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 6.5e-10 68.2 122 36.9
FAN12G1099 Fragaria x ananassa HOM05D000350 ORTHO05D000228 6.5e-10 68.2 132 37.1
Glyma.05G027400 Glycine max HOM05D000350 ORTHO05D000228 6.5e-10 68.2 139 33.1
Gohir.A13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 6.5e-10 68.2 111 42.3
PSO063G7487 Papaver somniferum HOM05D000350 ORTHO05D000228 6.5e-10 68.2 108 44.4
Glyma.06G193000 Glycine max HOM05D000350 ORTHO05D000228 8.5e-10 67.8 139 38.8
PSO017G3276 Papaver somniferum HOM05D000350 ORTHO05D000228 8.5e-10 67.8 132 35.6
PSO478G4552 Papaver somniferum HOM05D000350 ORTHO05D000228 8.5e-10 67.8 132 35.6
Sed0003260 Sechium edule HOM05D000350 ORTHO05D000228 8.5e-10 67.8 127 39.4
Haze_12026 Corylus avellana HOM05D000350 ORTHO05D000228 1.1e-09 67.4 118 43.2
ECA246G5143 Erigeron canadensis HOM05D000350 ORTHO05D000228 1.1e-09 67.4 90 40.0
FAN07G2340 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.1e-09 67.4 134 35.8
Dinv16633 Davidia involucrata HOM05D000350 ORTHO05D000228 1.4e-09 67.0 107 38.3
RcHm_v2.0_Chr4g0440011 Rosa chinensis HOM05D000350 ORTHO05D000228 2.5e-09 66.2 140 36.4
Migut.D01829 Erythranthe guttata HOM05D000350 ORTHO05D000228 3.2e-09 65.9 127 37.8
Oeu054894.1 Olea europaea HOM05D000350 ORTHO05D000228 5.5e-09 65.1 117 37.6
PGR044G1024 Punica granatum HOM05D000350 ORTHO05D000228 7.2e-09 64.7 140 35.7
Lj1g0013982 Lotus japonicus HOM05D000350 ORTHO05D000228 9.4e-09 64.3 103 41.7
HanXRQChr05g0158111 Helianthus annuus HOM05D000350 ORTHO05D000228 1.2e-08 63.9 107 34.6
CiPaw.06G083400 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.6e-08 63.5 115 40.0
MD06G1191800 Malus domestica HOM05D000350 ORTHO05D000228 1.6e-08 63.5 127 39.4
Oeu060803.1 Olea europaea HOM05D000350 ORTHO05D000228 2.1e-08 63.2 102 43.1
HPP92_013066 Vanilla planifolia HOM05D000350 ORTHO05D022227 2.1e-08 63.2 67 47.8
CsaV3_5G032590 Cucumis sativus L. HOM05D000350 ORTHO05D000228 2.7e-08 62.8 141 36.2
Oeu014029.1 Olea europaea HOM05D000350 ORTHO05D000228 3.6e-08 62.4 121 36.4
TWI60G1271 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.6e-08 62.4 93 40.9
MD14G1198200 Malus domestica HOM05D000350 ORTHO05D000228 4.6e-08 62.0 127 40.2
Dinv19949 Davidia involucrata HOM05D000350 ORTHO05D000228 7.9e-08 61.2 147 34.0
MD16G1074800 Malus domestica HOM05D000350 ORTHO05D000228 7.9e-08 61.2 127 34.6
Phvul.002G086600 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 7.9e-08 61.2 125 34.4
VMungo1215G1479 Vigna mungo HOM05D000350 ORTHO05D000228 1.4e-07 60.5 126 34.1
DCAR_031027 Daucus carota HOM05D000350 ORTHO05D000228 1.8e-07 60.1 136 36.8
DCAR_031028 Daucus carota HOM05D000350 ORTHO05D000228 1.8e-07 60.1 136 36.8
Lj4g0017086 Lotus japonicus HOM05D000350 ORTHO05D000228 2.3e-07 59.7 122 38.5
Actinidia31202 Actinidia chinensis HOM05D000350 ORTHO05D000228 5.1e-07 58.5 115 35.7
CDE02G3022 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 5.1e-07 58.5 114 34.2
AUR62021710 Chenopodium quinoa HOM05D002208 ORTHO05D002333 5.1e-07 58.5 101 40.6
QL03p064542 Quercus lobata HOM05D000350 ORTHO05D000228 5.1e-07 58.5 132 36.4
MSTRG.694 Avicennia marina HOM05D000350 ORTHO05D000228 8.8e-07 57.8 110 37.3
TWI18G0622 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 8.8e-07 57.8 104 40.4
Glyma.02G105900 Glycine max HOM05D000350 ORTHO05D000228 1.1e-06 57.4 129 31.0
Oeu001576.1 Olea europaea HOM05D000350 ORTHO05D000228 1.1e-06 57.4 114 36.0
Ah.02g113370 Amaranthus hybridus HOM05D000350 ORTHO05D000228 1.5e-06 57.0 132 35.6
Ca_04773_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.5e-06 57.0 140 30.7
Migut.L01307 Erythranthe guttata HOM05D000350 ORTHO05D000228 2.0e-06 56.6 120 32.5
PSO832G2891 Papaver somniferum HOM05D000350 ORTHO05D000228 2.0e-06 56.6 83 45.8
PGR102G2484 Punica granatum HOM05D000350 ORTHO05D000228 2.0e-06 56.6 137 32.1
Zm00001eb279580 Zea mays HOM05D000350 ORTHO05D000228 2.0e-06 56.6 51 56.9
unitig_46.g18466 Utricularia gibba HOM05D000350 ORTHO05D000228 2.5e-06 56.2 102 33.3
Lalb_Chr17g0340581 Lupinus albus HOM05D000350 ORTHO05D000228 4.3e-06 55.5 128 37.5
Os02g0747400 Oryza sativa ssp. japonica HOM05D000350 ORTHO05D000228 7.4e-06 54.7 72 38.9
Prupe.5G191200 Prunus persica HOM05D000350 ORTHO05D000228 7.4e-06 54.7 104 39.4
TWI12G1475 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 7.4e-06 54.7 124 36.3
EL10Ac5g10982 Beta vulgaris HOM05D000350 ORTHO05D000228 9.7e-06 54.3 123 35.0
ECA232G1504 Erigeron canadensis HOM05D000350 ORTHO05D000228 9.7e-06 54.3 71 43.7


User provided reference genes

Program Settings