Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc123.2 Carica papaya HOM05D005426 ORTHO05D006996 9.4e-121 436.8 209 100.0
TWI36G0998 Tripterygium wilfordii HOM05D005426 ORTHO05D006996 1.0e-50 204.1 120 83.3
Atru.chr12.1803 Acer truncatum HOM05D005426 ORTHO05D006996 1.7e-50 203.4 120 82.5
Atru.chr12.1804 Acer truncatum HOM05D005426 ORTHO05D006996 1.7e-50 203.4 120 82.5
CANSAT54G2247 Cannabis sativa HOM05D005426 ORTHO05D006996 1.7e-50 203.4 120 83.3
Manes.09G184500 Manihot esculenta HOM05D005426 ORTHO05D006996 2.3e-50 203.0 120 83.3
Sabra19G0062300 Salix brachista HOM05D005426 ORTHO05D006996 3.9e-50 202.2 119 83.2
THA.LOC104821953 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 6.6e-50 201.4 124 80.6
THA.LOC104823814 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.9e-49 199.9 122 80.3
PGSC0003DMG400010533 Solanum tuberosum HOM05D005426 ORTHO05D006996 4.3e-49 198.7 120 80.8
THA.LOC104805695 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 5.6e-49 198.4 124 79.8
Potri.013G087100 Populus trichocarpa HOM05D005426 ORTHO05D006996 7.3e-49 198.0 120 81.7
Potri.019G052650 Populus trichocarpa HOM05D005426 ORTHO05D006996 7.3e-49 198.0 120 80.8
CiPaw.07G079000 Carya illinoinensis HOM05D005426 ORTHO05D006996 9.5e-49 197.6 123 82.1
Haze_04540 Corylus avellana HOM05D005426 ORTHO05D006996 9.5e-49 197.6 140 75.0
Solyc04g056630.3 Solanum lycopersicum HOM05D005426 ORTHO05D006996 9.5e-49 197.6 120 80.0
Sabra13G0076900 Salix brachista HOM05D005426 ORTHO05D006996 1.6e-48 196.8 120 80.8
Sopen04g025550 Solanum pennellii HOM05D005426 ORTHO05D006996 2.1e-48 196.4 120 79.2
ClCG11G010880 Citrullus lanatus HOM05D005426 ORTHO05D006996 2.8e-48 196.1 120 78.3
Sp5g19990 Schrenkiella parvula HOM05D005426 ORTHO05D006996 2.8e-48 196.1 123 80.5
Sc09g0001540 Simmondsia chinensis HOM05D005426 ORTHO05D006996 2.8e-48 196.1 120 81.7
Nn1g09751 Nelumbo nucifera HOM05D005426 ORTHO05D006996 3.6e-48 195.7 120 80.0
Thecc.05G201400 Theobroma cacao HOM05D005426 ORTHO05D006996 3.6e-48 195.7 120 80.0
COL.COLO4_27402 Corchorus olitorius HOM05D005426 ORTHO05D006996 8.1e-48 194.5 115 80.9
HanXRQChr05g0156971 Helianthus annuus HOM05D005426 ORTHO05D006996 8.1e-48 194.5 121 80.2
Cc09_g03460 Coffea canephora HOM05D005426 ORTHO05D006996 1.1e-47 194.1 120 80.0
PGR119G1058 Punica granatum HOM05D005426 ORTHO05D006996 1.1e-47 194.1 120 79.2
AL2G21140 Arabidopsis lyrata HOM05D005426 ORTHO05D006996 1.4e-47 193.7 123 79.7
AT1G65320 Arabidopsis thaliana HOM05D005426 ORTHO05D006996 1.8e-47 193.4 123 79.7
Carub.0002s1099 Capsella rubella HOM05D005426 ORTHO05D006996 1.8e-47 193.4 124 79.0
CsaV3_2G009590 Cucumis sativus L. HOM05D005426 ORTHO05D006996 1.8e-47 193.4 120 75.8
Thhalv10018605m.g Eutrema salsugineum HOM05D005426 ORTHO05D006996 1.8e-47 193.4 123 78.9
Manes.08G104500 Manihot esculenta HOM05D005426 ORTHO05D006996 1.8e-47 193.4 120 80.8
Duzib128G0943 Durio zibethinus HOM05D005426 ORTHO05D006996 2.4e-47 193.0 116 80.2
C06p39010 Brassica napus HOM05D005426 ORTHO05D006996 3.1e-47 192.6 124 77.4
BolC6t38993H Brassica oleracea HOM05D005426 ORTHO05D006996 3.1e-47 192.6 124 77.4
CARHR056990 Cardamine hirsuta HOM05D005426 ORTHO05D006996 3.1e-47 192.6 123 78.9
A07p32800 Brassica napus HOM05D005426 ORTHO05D006996 4.0e-47 192.2 124 77.4
BraA07t30907Z Brassica rapa HOM05D005426 ORTHO05D006996 4.0e-47 192.2 124 77.4
Cfa006272 Carpinus fangiana HOM05D005426 ORTHO05D006996 4.0e-47 192.2 121 82.6
GSVIVG01019128001 Vitis vinifera HOM05D005426 ORTHO05D006996 4.0e-47 192.2 120 80.0
Lj1C584T3 Lonicera japonica HOM05D005426 ORTHO05D006996 5.2e-47 191.8 116 80.2
Sed0025831 Sechium edule HOM05D005426 ORTHO05D006996 5.2e-47 191.8 120 78.3
Duzib177G1068 Durio zibethinus HOM05D005426 ORTHO05D006996 6.8e-47 191.4 120 79.2
Prupe.6G359700 Prunus persica HOM05D005426 ORTHO05D006996 6.8e-47 191.4 120 75.0
Sed0018334 Sechium edule HOM05D005426 ORTHO05D006996 6.8e-47 191.4 120 75.0
Hund21893 Selenicereus undatus HOM05D005426 ORTHO05D006996 8.9e-47 191.0 120 79.2
Hund27503 Selenicereus undatus HOM05D005426 ORTHO05D006996 8.9e-47 191.0 120 79.2
Gohir.D13G159300 Gossypium hirsutum HOM05D005426 ORTHO05D006996 1.2e-46 190.7 120 77.5
Gorai.013G180000 Gossypium raimondii HOM05D005426 ORTHO05D006996 1.2e-46 190.7 120 77.5
RcHm_v2.0_Chr3g0448131 Rosa chinensis HOM05D005426 ORTHO05D006996 1.2e-46 190.7 120 78.3
Aa31LG2G2420 Aethionema arabicum HOM05D005426 ORTHO05D006996 1.5e-46 190.3 123 78.9
Lsat_1_v5_gn_8_2121 Lactuca sativa HOM05D005426 ORTHO05D006996 1.5e-46 190.3 121 76.0
FAN02G2606 Fragaria x ananassa HOM05D005426 ORTHO05D006996 2.0e-46 189.9 120 77.5
FAN14G1411 Fragaria x ananassa HOM05D005426 ORTHO05D006996 2.0e-46 189.9 120 77.5
MELO3C008749.2 Cucumis melo HOM05D005426 ORTHO05D006996 2.6e-46 189.5 120 75.8
Dinv02954 Davidia involucrata HOM05D005426 ORTHO05D006996 2.6e-46 189.5 120 78.3
Nitab4.5_0000946g0070 Nicotiana tabacum HOM05D005426 ORTHO05D006996 3.4e-46 189.1 120 78.3
FvH4_6g00690 Fragaria vesca HOM05D005426 ORTHO05D006996 4.4e-46 188.7 120 76.7
FAN09G3203 Fragaria x ananassa HOM05D005426 ORTHO05D006996 4.4e-46 188.7 120 76.7
Nitab4.5_0001857g0010 Nicotiana tabacum HOM05D005426 ORTHO05D006996 4.4e-46 188.7 120 77.5
Ah.06g195530 Amaranthus hybridus HOM05D005426 ORTHO05D006996 7.6e-46 188.0 120 75.8
Oeu057509.1 Olea europaea HOM05D005426 ORTHO05D006996 7.6e-46 188.0 120 78.3
Aqoxy2G04057 Aquilegia oxysepala HOM05D005426 ORTHO05D006996 1.3e-45 187.2 122 75.4
CAN.G217.1 Capsicum annuum HOM05D005426 ORTHO05D006996 1.3e-45 187.2 120 75.8
MBI07_g22285_MAGBIO Magnolia biondii HOM05D005426 ORTHO05D006996 2.9e-45 186.0 120 75.8
BcaNung05534 Brassica carinata HOM05D005426 ORTHO05D006996 3.8e-45 185.7 125 79.2
CSS0022114 Camellia sinensis var. sinensis HOM05D005426 ORTHO05D006996 3.8e-45 185.7 121 78.5
AUR62006669 Chenopodium quinoa HOM05D005426 ORTHO05D006996 3.8e-45 185.7 120 75.8
ECA233G3371 Erigeron canadensis HOM05D005426 ORTHO05D006996 4.9e-45 185.3 122 74.6
Hund07333 Selenicereus undatus HOM05D005426 ORTHO05D006996 4.9e-45 185.3 120 75.8
Nn3g20159 Nelumbo nucifera HOM05D005426 ORTHO05D006996 6.4e-45 184.9 120 73.3
Oeu062056.1 Olea europaea HOM05D005426 ORTHO05D006996 6.4e-45 184.9 120 77.5
FAN05G3082 Fragaria x ananassa HOM05D005426 ORTHO05D006996 8.4e-45 184.5 120 75.8
AUR62000325 Chenopodium quinoa HOM05D005426 ORTHO05D006996 1.1e-44 184.1 120 75.0
arahy.Tifrunner.gnm1.ann1.UZF72T Arachis hypogaea HOM05D005426 ORTHO05D006996 1.4e-44 183.7 115 79.1
arahy.Tifrunner.gnm1.ann1.V3Q9UL Arachis hypogaea HOM05D005426 ORTHO05D006996 1.4e-44 183.7 115 79.1
Eucgr.B01402 Eucalyptus grandis HOM05D005426 ORTHO05D006996 1.9e-44 183.3 126 72.2
Lj1g0020299 Lotus japonicus HOM05D005426 ORTHO05D006996 1.9e-44 183.3 123 74.0
TAR633G1216 Trochodendron aralioides HOM05D005426 ORTHO05D006996 4.2e-44 182.2 120 73.3
Dinv29116 Davidia involucrata HOM05D005426 ORTHO05D006996 5.4e-44 181.8 120 75.0
Actinidia06809 Actinidia chinensis HOM05D005426 ORTHO05D006996 7.1e-44 181.4 121 74.4
Phvul.008G055300 Phaseolus vulgaris HOM05D005426 ORTHO05D006996 9.2e-44 181.0 120 75.0
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 1.2e-43 180.6 121 74.4
EL10Ac4g09981 Beta vulgaris HOM05D005426 ORTHO05D006996 1.2e-43 180.6 120 74.2
TPR.G28454 Trifolium pratense HOM05D005426 ORTHO05D006996 1.2e-43 180.6 120 75.0
Psat3g103920 Pisum sativum HOM05D005426 ORTHO05D006996 1.6e-43 180.3 120 76.7
Rhsim05G0168400 Rhododendron simsii HOM05D005426 ORTHO05D006996 1.6e-43 180.3 123 75.6
VMungo1383G1630 Vigna mungo HOM05D005426 ORTHO05D006996 1.6e-43 180.3 120 74.2
CDE05G2651 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 2.1e-43 179.9 120 72.5
PSO357G0677 Papaver somniferum HOM05D005426 ORTHO05D006996 2.1e-43 179.9 129 68.2
Glyma.18G240900 Glycine max HOM05D005426 ORTHO05D006996 2.7e-43 179.5 120 75.0
Lalb_Chr19g0126721 Lupinus albus HOM05D005426 ORTHO05D006996 2.7e-43 179.5 120 70.0
PSO170G2522 Papaver somniferum HOM05D005426 ORTHO05D006996 2.7e-43 179.5 129 67.4
vmacro19612 Vaccinium macrocarpon HOM05D005426 ORTHO05D006996 3.5e-43 179.1 133 69.2
Glyma.09G251700 Glycine max HOM05D005426 ORTHO05D006996 1.3e-42 177.2 120 74.2
Lalb_Chr01g0020331 Lupinus albus HOM05D005426 ORTHO05D006996 1.3e-42 177.2 120 72.5
Gohir.A11G304050 Gossypium hirsutum HOM05D005426 ORTHO05D006996 1.7e-42 176.8 120 70.8
SHI13731 Sapria himalayana HOM05D005426 ORTHO05D006996 2.3e-42 176.4 120 70.8
Peaxi162Scf00976g00112 Petunia axillaris HOM05D005426 ORTHO05D006996 3.9e-42 175.6 109 79.8
Ca_07968_v3 Cicer arietinum L. HOM05D005426 ORTHO05D006996 8.7e-42 174.5 197 50.8
MSTRG.322 Avicennia marina HOM05D005426 ORTHO05D006996 1.5e-41 173.7 120 70.8
CDE05G2572 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 1.5e-41 173.7 120 72.5
DCAR_023850 Daucus carota HOM05D005426 ORTHO05D006996 2.5e-41 172.9 118 72.9
SalBow6G7075 Salvia bowleyana HOM05D005426 ORTHO05D006996 2.5e-41 172.9 120 71.7
TAR362G1314 Trochodendron aralioides HOM05D005426 ORTHO05D006996 2.5e-41 172.9 120 71.7
Gohir.D11G319500 Gossypium hirsutum HOM05D005426 ORTHO05D006996 3.3e-41 172.6 120 69.2
Medtr7g079680 Medicago truncatula HOM05D005426 ORTHO05D006996 3.3e-41 172.6 120 72.5
Gorai.007G349600 Gossypium raimondii HOM05D005426 ORTHO05D006996 9.6e-41 171.0 120 69.2
MSTRG.8218 Avicennia marina HOM05D005426 ORTHO05D006996 1.3e-40 170.6 120 69.2
SGA_v2.0_scaffold122G33173 Striga asiatica HOM05D005426 ORTHO05D006996 2.8e-40 169.5 142 61.3
Migut.F01881 Erythranthe guttata HOM05D005426 ORTHO05D006996 8.1e-40 167.9 120 67.5
unitig_736.g22805 Utricularia gibba HOM05D005426 ORTHO05D006996 8.1e-40 167.9 115 70.4
MD04G1243500 Malus domestica HOM05D005426 ORTHO05D006996 4.2e-36 155.6 97 75.3
BcaB07g32511 Brassica carinata HOM05D005426 ORTHO05D006996 1.0e-34 151.0 119 65.5
ATR0561G270 Amborella trichopoda HOM05D005426 ORTHO05D006996 5.1e-34 148.7 120 60.8
Peaxi162Scf00156g00415 Petunia axillaris HOM05D005426 ORTHO05D006996 6.6e-34 148.3 101 73.3
SEGI_22479 Sequoiadendron giganteum HOM05D005426 ORTHO05D006996 1.7e-29 133.7 118 57.6
HPP92_003199 Vanilla planifolia HOM05D005426 ORTHO05D006996 3.5e-27 125.9 120 58.3
Zm00001eb143290 Zea mays HOM05D005426 ORTHO05D006996 1.7e-21 107.1 120 45.8
Gohir.A13G154600 Gossypium hirsutum HOM05D005426 ORTHO05D006996 3.2e-20 102.8 66 72.7
Mapoly0030s0135 Marchantia polymorpha HOM05D005426 ORTHO05D006996 1.6e-16 90.5 139 38.1
BcaB08g34728 Brassica carinata HOM05D005426 ORTHO05D013524 4.8e-16 89.0 109 52.3
Os01g0920000 Oryza sativa ssp. japonica HOM05D005426 ORTHO05D006996 2.5e-12 76.6 120 40.0
BcaB04g17522 Brassica carinata HOM05D005426 ORTHO05D006996 7.1e-12 75.1 54 68.5
BcaB02g06947 Brassica carinata HOM05D005426 ORTHO05D006996 1.8e-10 70.5 105 46.7
Hund22948 Selenicereus undatus HOM05D002177 ORTHO05D002257 5.1e-10 68.9 123 36.6
Solyc02g078480.3 Solanum lycopersicum HOM05D002177 ORTHO05D002257 1.5e-09 67.4 124 29.8
PGSC0003DMG400022383 Solanum tuberosum HOM05D002177 ORTHO05D002257 1.5e-09 67.4 122 29.5
BcaB04g18319 Brassica carinata HOM05D007694 ORTHO05D091879 2.5e-09 66.6 53 67.9
Nitab4.5_0001357g0020 Nicotiana tabacum HOM05D002177 ORTHO05D002257 4.3e-09 65.9 123 28.5
PGSC0003DMG400022829 Solanum tuberosum HOM05D002177 ORTHO05D002257 4.3e-09 65.9 135 31.1
Nitab4.5_0009493g0010 Nicotiana tabacum HOM05D002177 ORTHO05D002257 1.3e-08 64.3 124 29.0
BcaB05g22892 Brassica carinata HOM05D005426 ORTHO05D095396 2.8e-08 63.2 136 35.3
Sopen02g023330 Solanum pennellii HOM05D002177 ORTHO05D002257 2.8e-08 63.2 123 30.1
Nitab4.5_0009068g0010 Nicotiana tabacum HOM05D002177 ORTHO05D002257 3.7e-08 62.8 120 28.3
PGSC0003DMG400012809 Solanum tuberosum HOM05D002177 ORTHO05D002257 3.7e-08 62.8 123 26.8
Solyc10g009010.4 Solanum lycopersicum HOM05D002177 ORTHO05D002257 4.8e-08 62.4 135 31.1
Solyc03g006470.3 Solanum lycopersicum HOM05D002177 ORTHO05D002257 6.3e-08 62.0 122 27.0
Sopen03g002470 Solanum pennellii HOM05D002177 ORTHO05D002257 6.3e-08 62.0 122 27.0
Sopen10g004790 Solanum pennellii HOM05D002177 ORTHO05D002257 6.3e-08 62.0 135 31.1
Zm00001eb036450 Zea mays HOM05D005426 ORTHO05D006996 6.3e-08 62.0 113 36.3
CAN.G1164.9 Capsicum annuum HOM05D002177 ORTHO05D002257 1.4e-07 60.8 120 30.0
RcHm_v2.0_Chr5g0034541 Rosa chinensis HOM05D002177 ORTHO05D002257 2.4e-07 60.1 124 31.5
EL10Ac4g08122 Beta vulgaris HOM05D002177 ORTHO05D002257 3.1e-07 59.7 132 28.0
PSO210G4310 Papaver somniferum HOM05D002177 ORTHO05D002257 3.1e-07 59.7 127 26.0
Sc03g0009880 Simmondsia chinensis HOM05D002177 ORTHO05D002257 3.1e-07 59.7 118 28.8
FvH4_3g20550 Fragaria vesca HOM05D002177 ORTHO05D002257 4.1e-07 59.3 124 30.6
FAN11G3911 Fragaria x ananassa HOM05D002177 ORTHO05D002257 4.1e-07 59.3 124 30.6
BcaB04g17089 Brassica carinata HOM05D131151 ORTHO05D093167 6.9e-07 58.5 80 46.2
Os08g0529200 Oryza sativa ssp. japonica HOM05D005426 ORTHO05D006996 9.0e-07 58.2 114 33.3
TPR.G38942 Trifolium pratense HOM05D002177 ORTHO05D002257 9.0e-07 58.2 120 28.3
FAN25G0148 Fragaria x ananassa HOM05D002177 ORTHO05D002257 1.2e-06 57.8 124 29.8
Nitab4.5_0004775g0040 Nicotiana tabacum HOM05D002177 ORTHO05D002257 1.2e-06 57.8 122 26.2
Peaxi162Scf00530g00820 Petunia axillaris HOM05D002177 ORTHO05D002257 1.2e-06 57.8 146 28.8
Lj3g0000287 Lotus japonicus HOM05D002177 ORTHO05D002257 2.6e-06 56.6 120 28.3
GSVIVG01014382001 Vitis vinifera HOM05D002177 ORTHO05D002257 3.4e-06 56.2 121 31.4
BcaNung01642 Brassica carinata HOM05D002141 ORTHO05D002119 4.5e-06 55.8 92 44.6
HanXRQChr05g0156771 Helianthus annuus HOM05D002177 ORTHO05D002257 4.5e-06 55.8 131 26.7
Pp3c15_14540 Physcomitrium patens HOM05D002177 ORTHO05D002257 4.5e-06 55.8 157 26.1
Pp3c9_21880 Physcomitrium patens HOM05D002177 ORTHO05D002257 4.5e-06 55.8 157 25.5
CDE09G0097 Ceratophyllum demersum HOM05D002177 ORTHO05D002257 5.9e-06 55.5 113 32.7
Migut.H01925 Erythranthe guttata HOM05D002177 ORTHO05D002257 5.9e-06 55.5 122 28.7
AagrBONN_evm.TU.Sc2ySwM_117.2823 Anthoceros agrestis HOM05D005426 ORTHO05D006996 7.7e-06 55.1 63 38.1
HanXRQChr11g0328351 Helianthus annuus HOM05D002177 ORTHO05D002257 7.7e-06 55.1 130 26.9
Nitab4.5_0000207g0200 Nicotiana tabacum HOM05D002177 ORTHO05D002257 7.7e-06 55.1 120 26.7
Nitab4.5_0001320g0150 Nicotiana tabacum HOM05D002177 ORTHO05D002257 7.7e-06 55.1 120 25.8
TAR629G1520 Trochodendron aralioides HOM05D002177 ORTHO05D002257 7.7e-06 55.1 122 30.3
Cfa020550 Carpinus fangiana HOM05D002177 ORTHO05D002257 1.0e-05 54.7 126 28.6
SalBow2G3463 Salvia bowleyana HOM05D002177 ORTHO05D002257 1.0e-05 54.7 115 29.6
GSVIVG01002034001 Vitis vinifera HOM05D002177 ORTHO05D002257 1.0e-05 54.7 120 27.5


User provided reference genes

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