Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 2.1e-39 165.2 82 100.0
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 7.1e-16 87.0 47 91.5
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 7.1e-16 87.0 47 91.5
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 1.2e-15 86.3 47 91.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 2.7e-15 85.1 47 87.2
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 2.7e-15 85.1 47 87.2
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 2.7e-15 85.1 47 89.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 4.6e-15 84.3 47 87.2
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 4.6e-15 84.3 47 87.2
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 4.6e-15 84.3 47 87.2
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 4.6e-15 84.3 47 87.2
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 4.6e-15 84.3 47 87.2
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 6.0e-15 84.0 47 87.2
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 6.0e-15 84.0 47 85.1
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 6.0e-15 84.0 47 87.2
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 6.0e-15 84.0 47 87.2
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 6.0e-15 84.0 47 87.2
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 85.1
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.0e-14 83.2 47 87.2
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 1.3e-14 82.8 47 85.1
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.3e-14 82.8 47 85.1
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.3e-14 82.8 47 85.1
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 1.8e-14 82.4 47 85.1
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 2.3e-14 82.0 47 85.1
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 3.0e-14 81.6 47 83.0
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 3.0e-14 81.6 47 83.0
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.0e-14 81.6 47 83.0
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.0e-14 81.6 47 83.0
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 3.0e-14 81.6 47 85.1
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 3.9e-14 81.3 47 83.0
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 3.9e-14 81.3 47 87.2
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.9e-14 81.3 47 87.2
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 3.9e-14 81.3 47 87.2
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.1e-14 80.9 47 83.0
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.1e-14 80.9 47 83.0
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 6.7e-14 80.5 47 80.9
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 6.7e-14 80.5 47 80.9
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 8.7e-14 80.1 47 78.7
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 1.1e-13 79.7 47 85.1
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 1.1e-13 79.7 47 85.1
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 1.5e-13 79.3 47 78.7
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 1.5e-13 79.3 47 80.9
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 2.5e-13 78.6 47 80.9
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 2.5e-13 78.6 47 80.9
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 2.5e-13 78.6 47 80.9
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 3.3e-13 78.2 47 78.7
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 3.3e-13 78.2 47 76.6
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 4.3e-13 77.8 47 80.9
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 4.3e-13 77.8 47 80.9
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 4.3e-13 77.8 47 83.0
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 5.7e-13 77.4 47 80.9
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 5.7e-13 77.4 47 76.6
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 5.7e-13 77.4 47 83.0
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 5.7e-13 77.4 47 78.7
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 5.7e-13 77.4 47 80.9
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 7.4e-13 77.0 47 78.7
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 7.4e-13 77.0 47 76.6
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 9.6e-13 76.6 47 78.7
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 1.3e-12 76.3 47 80.9
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.3e-12 76.3 47 83.0
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 1.3e-12 76.3 47 74.5
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 1.3e-12 76.3 47 80.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 1.3e-12 76.3 47 83.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 1.6e-12 75.9 47 76.6
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 1.6e-12 75.9 47 74.5
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 2.1e-12 75.5 47 78.7
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 2.1e-12 75.5 47 78.7
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 2.1e-12 75.5 47 74.5
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 2.8e-12 75.1 47 74.5
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 2.8e-12 75.1 47 76.6
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 3.7e-12 74.7 47 78.7
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 4.8e-12 74.3 47 74.5
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 4.8e-12 74.3 47 80.9
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 4.8e-12 74.3 47 76.6
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 6.2e-12 73.9 47 76.6
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 8.2e-12 73.6 47 72.3
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 8.2e-12 73.6 57 64.9
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 2.4e-11 72.0 57 66.7
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 2.4e-11 72.0 57 66.7
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 2.4e-11 72.0 47 78.7
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 2.4e-11 72.0 47 78.7
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 3.1e-11 71.6 47 76.6
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 4.0e-11 71.2 47 74.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.2e-10 69.7 47 66.0
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.2e-10 69.7 47 68.1
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 1.2e-10 69.7 47 72.3
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.2e-10 69.7 47 70.2
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.2e-10 69.7 47 70.2
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 1.5e-10 69.3 47 72.3
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 2.0e-10 68.9 47 72.3
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 4.5e-10 67.8 47 68.1
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 4.5e-10 67.8 37 83.8
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 4.5e-10 67.8 47 66.0
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 7.6e-10 67.0 51 60.8
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 7.6e-10 67.0 47 72.3
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 1.3e-09 66.2 47 70.2
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 1.7e-09 65.9 51 60.8
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 2.2e-09 65.5 47 70.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 2.9e-09 65.1 47 66.0
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.8e-09 64.7 47 66.0
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 3.8e-09 64.7 47 66.0
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 5.0e-09 64.3 47 61.7
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 6.5e-09 63.9 47 63.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 1.1e-08 63.2 47 66.0
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.2e-08 61.6 47 63.8
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 3.2e-08 61.6 37 73.0
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.5e-08 60.8 83 47.0
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.2e-07 59.7 47 59.6
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 2.1e-07 58.9 47 59.6
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 2.7e-07 58.5 47 61.7
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.1e-07 57.4 48 60.4
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.3e-06 55.5 47 55.3


User provided reference genes

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