Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 9.9e-68 260.0 132 100.0
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 3.0e-24 115.5 135 51.1
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 4.4e-23 111.7 134 50.7
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.7e-23 111.3 137 49.6
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 4.1e-21 105.1 137 51.1
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.5e-20 103.2 140 47.1
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.5e-20 103.2 145 48.3
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 2.0e-20 102.8 140 46.4
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 3.4e-20 102.1 144 47.2
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 3.4e-20 102.1 134 47.8
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.3e-19 100.1 134 46.3
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.3e-19 100.1 138 47.1
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 2.2e-19 99.4 138 44.2
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.8e-19 98.6 137 43.8
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 8.5e-19 97.4 137 44.5
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 3.2e-18 95.5 139 43.9
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.2e-18 95.5 143 44.8
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-17 93.6 143 44.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.2e-17 93.6 143 44.1
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 1.6e-17 93.2 118 44.1
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.6e-17 93.2 136 44.9
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 2.1e-17 92.8 117 44.4
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.1e-17 92.8 137 43.1
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.7e-17 92.4 134 42.5
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.7e-17 92.4 118 44.1
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.6e-17 92.0 136 43.4
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 4.7e-17 91.7 118 43.2
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 6.1e-17 91.3 139 42.4
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.4e-16 90.1 135 45.2
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.8e-16 89.7 135 45.2
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.8e-16 89.7 135 45.2
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 2.3e-16 89.4 112 44.6
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 6.7e-16 87.8 113 45.1
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 8.8e-16 87.4 135 43.0
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 1.1e-15 87.0 137 43.1
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-15 86.3 134 40.3
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-15 86.3 134 40.3
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 2.6e-15 85.9 134 41.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 4.4e-15 85.1 137 42.3
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 9.7e-15 84.0 138 39.1
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 2.2e-14 82.8 133 40.6
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 2.8e-14 82.4 139 40.3
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 8.2e-14 80.9 117 41.0
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 8.2e-14 80.9 133 37.6
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.4e-13 80.1 112 42.9
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.4e-13 79.3 137 39.4
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 4.1e-13 78.6 137 39.4
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.1e-13 78.6 128 39.8
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 4.1e-13 78.6 123 39.0
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.3e-13 78.2 104 43.3
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.0e-12 76.3 135 38.5
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 3.5e-12 75.5 84 48.8
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.5e-12 75.1 139 39.6
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 7.7e-12 74.3 132 37.1
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 1.0e-11 73.9 99 52.5
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 1.3e-11 73.6 127 38.6
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.2e-11 72.8 132 39.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 2.2e-11 72.8 123 43.1
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 2.2e-11 72.8 139 39.6
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 5.0e-11 71.6 128 40.6
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.5e-11 71.2 104 42.3
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 6.5e-11 71.2 126 43.7
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 8.5e-11 70.9 131 38.9
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 8.5e-11 70.9 118 39.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.5e-11 70.9 132 39.4
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.1e-10 70.5 132 33.3
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.1e-10 70.5 134 39.6
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.1e-10 70.5 134 39.6
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 1.1e-10 70.5 95 44.2
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 1.5e-10 70.1 105 44.8
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 1.9e-10 69.7 96 45.8
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.9e-10 69.7 121 36.4
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.2e-10 68.9 129 40.3
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.2e-10 68.9 132 38.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 3.2e-10 68.9 136 36.8
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 3.2e-10 68.9 90 43.3
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 7.2e-10 67.8 135 36.3
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 9.4e-10 67.4 139 35.3
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 9.4e-10 67.4 119 42.9
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.2e-09 67.0 97 44.3
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.2e-09 67.0 123 35.8
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.6e-09 66.6 103 42.7
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 2.1e-09 66.2 120 40.8
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 2.7e-09 65.9 100 37.0
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 3.6e-09 65.5 128 35.9
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.0e-09 64.3 101 35.6
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.0e-09 64.3 101 35.6
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 2.3e-08 62.8 116 38.8
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 2.3e-08 62.8 136 34.6
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.0e-08 62.4 109 41.3
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.0e-08 62.4 100 38.0
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.0e-08 62.4 105 39.0
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.0e-08 62.4 127 36.2
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.0e-08 62.4 105 40.0
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.0e-08 62.0 105 41.0
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 8.8e-08 60.8 105 40.0
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 1.5e-07 60.1 105 39.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-07 60.1 105 39.0
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 2.0e-07 59.7 115 36.5
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 2.6e-07 59.3 104 32.7
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.3e-07 58.9 105 40.0
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 3.3e-07 58.9 85 48.2
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 4.4e-07 58.5 136 35.3
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 5.7e-07 58.2 142 31.0
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 9.7e-07 57.4 132 34.8
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 1.3e-06 57.0 95 36.8
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.7e-06 56.6 105 37.1
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 1.7e-06 56.6 94 38.3


User provided reference genes

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