Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 3.5e-155 551.6 280 100.0
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.1e-135 486.9 255 94.1
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.0e-134 482.6 257 91.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.6e-134 480.7 256 92.6
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 2.2e-133 479.2 257 92.2
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 2.2e-133 479.2 257 92.2
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.2e-133 479.2 257 91.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.8e-133 478.4 257 91.4
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.8e-133 478.4 257 92.2
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.8e-133 478.4 257 91.8
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 3.8e-133 478.4 257 91.8
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 4.9e-133 478.0 257 93.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 4.9e-133 478.0 257 90.7
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 6.4e-133 477.6 257 91.4
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 6.4e-133 477.6 257 91.1
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 6.4e-133 477.6 257 91.4
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.9e-132 476.1 257 91.8
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 3.2e-132 475.3 257 91.4
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 3.2e-132 475.3 257 91.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.2e-132 475.3 257 91.4
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.2e-132 474.9 257 91.1
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 4.2e-132 474.9 257 91.4
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.4e-132 474.6 257 91.4
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.4e-132 474.6 257 91.1
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.4e-132 474.6 257 90.3
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 9.2e-132 473.8 257 91.4
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.2e-131 473.4 257 90.7
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 1.2e-131 473.4 255 91.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.2e-131 473.4 257 90.7
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.2e-131 473.4 257 91.1
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.2e-131 473.4 257 91.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.1e-131 472.6 257 90.3
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.1e-131 472.6 257 90.7
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 2.1e-131 472.6 257 90.7
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.7e-131 472.2 257 90.7
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.7e-131 472.2 257 90.3
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.7e-131 472.2 257 89.9
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.7e-131 472.2 257 91.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.7e-131 472.2 257 89.9
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 3.5e-131 471.9 257 91.8
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 3.5e-131 471.9 256 89.8
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 3.5e-131 471.9 257 91.1
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.5e-131 471.9 257 88.7
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.6e-131 471.5 257 90.7
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.8e-131 470.7 257 91.4
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.0e-130 470.3 257 90.7
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.3e-130 469.9 257 91.1
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-130 469.9 257 91.1
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.3e-130 469.9 257 91.1
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.3e-130 469.9 257 91.1
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.7e-130 469.5 257 90.7
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.7e-130 469.5 257 90.3
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.7e-130 469.5 257 89.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 2.3e-130 469.2 273 86.4
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 3.0e-130 468.8 257 89.1
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.0e-130 468.8 257 91.1
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.5e-129 465.7 257 88.3
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.5e-129 465.7 255 89.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 2.5e-129 465.7 255 89.0
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.5e-129 465.7 257 89.9
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.5e-129 465.7 257 89.1
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.3e-129 465.3 266 87.6
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 4.3e-129 464.9 257 89.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 7.3e-129 464.2 255 89.4
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-128 463.4 256 89.1
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.3e-128 463.4 257 88.7
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.3e-128 463.4 257 88.7
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.6e-128 463.0 257 89.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.6e-128 463.0 257 89.5
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.1e-128 462.6 255 89.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.8e-128 462.2 257 88.3
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.6e-128 461.8 257 87.5
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 3.6e-128 461.8 257 87.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 6.2e-128 461.1 257 89.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 8.1e-128 460.7 257 88.7
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 8.1e-128 460.7 257 89.5
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.1e-127 460.3 257 88.3
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.8e-127 459.5 257 88.3
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 2.4e-127 459.1 257 87.9
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.1e-127 458.8 257 86.8
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.0e-127 458.4 257 86.8
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.3e-127 458.0 265 86.8
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 6.9e-127 457.6 257 87.2
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.2e-126 456.8 257 87.2
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 5.8e-126 454.5 257 86.0
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 7.6e-126 454.1 257 86.4
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 7.6e-126 454.1 257 86.4
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 7.6e-126 454.1 257 86.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.1e-124 450.3 257 86.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 2.4e-124 449.1 259 85.7
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 3.2e-124 448.7 257 85.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.2e-124 448.7 259 85.7
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-122 443.4 265 85.7
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.3e-122 442.6 257 83.7
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 3.0e-122 442.2 257 83.7
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.5e-121 439.1 278 79.9
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.5e-121 439.1 256 83.2
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.3e-121 438.7 238 90.3
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 4.3e-121 438.3 257 83.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.1e-120 436.0 251 84.1
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 8.1e-120 434.1 237 89.0
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.8e-119 433.0 256 82.0
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.8e-119 433.0 294 74.5
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-118 429.9 280 77.9
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.3e-117 426.8 256 80.9
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.8e-117 425.2 257 86.0
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-116 422.2 257 85.6
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 4.6e-115 418.3 296 74.3
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.8e-114 416.4 256 78.5
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.8e-114 416.4 290 76.9
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.0e-114 415.6 257 84.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.5e-113 413.3 256 78.1
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 5.6e-113 411.4 257 76.7
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.8e-106 389.8 216 88.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 6.7e-106 387.9 214 90.7
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 7.7e-94 347.8 257 68.5
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.7e-93 346.7 181 92.8
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 2.7e-91 339.3 259 71.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 7.9e-91 337.8 248 66.5
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.1e-89 334.0 258 65.1
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.0e-85 318.5 256 60.9
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.8e-72 276.2 148 87.8
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.6e-46 189.1 116 81.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 5.9e-46 188.7 153 66.0
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 3.0e-29 133.3 68 91.2
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 3.3e-28 129.8 76 89.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.4e-23 114.4 237 33.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.8e-19 100.1 58 84.5
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.4e-17 93.2 52 80.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 7.6e-17 92.0 228 30.3
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.9e-12 77.4 45 68.9
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-10 71.2 44 79.5
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-10 71.2 44 79.5
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 6.9e-10 68.9 70 62.9
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 1.7e-08 64.3 94 42.6
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 4.2e-07 59.7 55 61.8
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 4.6e-06 56.2 44 56.8


User provided reference genes

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