Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 8.8e-96 353.6 177 100.0
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 6.9e-24 114.8 184 38.0
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 4.5e-23 112.1 153 45.8
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 7.6e-23 111.3 118 50.0
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 1.3e-22 110.5 110 53.6
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 8.4e-22 107.8 111 55.9
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 1.4e-21 107.1 178 38.2
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 3.2e-21 105.9 118 51.7
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 5.5e-21 105.1 119 52.9
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 1.6e-20 103.6 133 46.6
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 4.6e-20 102.1 122 51.6
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 4.6e-20 102.1 123 47.2
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 3.9e-19 99.0 118 47.5
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 6.7e-19 98.2 110 50.9
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 1.9e-18 96.7 108 53.7
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.9e-18 96.7 116 48.3
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 4.3e-18 95.5 133 41.4
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 4.3e-18 95.5 116 48.3
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 4.3e-18 95.5 117 46.2
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 5.7e-18 95.1 116 48.3
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 5.7e-18 95.1 152 43.4
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 7.4e-18 94.7 123 46.3
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 7.4e-18 94.7 116 50.0
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 8.2e-17 91.3 151 42.4
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 8.2e-17 91.3 144 43.8
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 1.1e-16 90.9 117 46.2
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 1.1e-16 90.9 111 47.7
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 1.8e-16 90.1 117 45.3
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 2.4e-16 89.7 148 41.9
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 2.4e-16 89.7 113 44.2
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 3.1e-16 89.4 109 48.6
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 4.1e-16 89.0 111 49.5
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 4.1e-16 89.0 109 48.6
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.3e-16 88.6 126 44.4
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.3e-16 88.6 114 49.1
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 5.3e-16 88.6 110 48.2
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 5.3e-16 88.6 111 47.7
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 6.9e-16 88.2 112 46.4
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 6.9e-16 88.2 126 45.2
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 9.0e-16 87.8 108 48.1
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 1.2e-15 87.4 113 45.1
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 1.2e-15 87.4 113 45.1
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 1.2e-15 87.4 117 46.2
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 1.2e-15 87.4 117 46.2
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 1.2e-15 87.4 117 46.2
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 1.2e-15 87.4 126 45.2
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.2e-15 87.4 106 51.9
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 2.6e-15 86.3 123 42.3
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 2.6e-15 86.3 115 46.1
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 4.5e-15 85.5 108 47.2
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 4.5e-15 85.5 112 44.6
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 4.5e-15 85.5 111 45.0
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 7.6e-15 84.7 116 45.7
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 2.2e-14 83.2 124 44.4
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 2.9e-14 82.8 99 48.5
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.8e-14 82.4 102 47.1
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 3.8e-14 82.4 102 47.1
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 5.0e-14 82.0 94 50.0
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 6.5e-14 81.6 105 49.5
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 6.5e-14 81.6 155 34.2
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 1.1e-13 80.9 117 44.4
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 2.5e-13 79.7 122 41.0
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 7.2e-13 78.2 103 46.6
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.2e-12 77.4 156 35.3
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 1.6e-12 77.0 120 39.2
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 2.1e-12 76.6 120 39.2
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 3.5e-12 75.9 120 35.8
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 3.5e-12 75.9 168 34.5
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 4.6e-12 75.5 119 40.3
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 4.6e-12 75.5 123 39.0
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 3.0e-11 72.8 120 41.7
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 3.0e-11 72.8 116 40.5
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 3.9e-11 72.4 85 49.4
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 8.7e-11 71.2 135 35.6
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 5.7e-10 68.6 115 42.6
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 7.4e-10 68.2 115 42.6
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 2.2e-09 66.6 123 35.0
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 4.8e-09 65.5 136 33.8
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.1e-08 64.3 138 34.1
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 6.9e-08 61.6 137 36.5
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.0e-07 60.1 107 39.3
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 4.5e-07 58.9 76 40.8
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 7.7e-07 58.2 76 43.4
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 7.7e-07 58.2 76 43.4
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 6.5e-06 55.1 78 46.2


User provided reference genes

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