Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 0.0e+00 1698.3 1017 100.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.4e-121 441.8 912 39.0
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.4e-113 415.2 925 36.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 8.6e-111 406.0 930 36.2
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 9.5e-110 402.5 917 36.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.9e-106 390.2 924 35.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.1e-104 384.8 910 36.2
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.7e-103 381.7 910 35.6
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.7e-101 373.6 920 35.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 3.6e-93 347.4 926 34.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.7e-90 338.6 921 34.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 3.3e-86 324.3 946 33.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 4.0e-84 317.4 945 32.8
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.2e-83 315.8 939 31.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.9e-82 311.2 584 39.7
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 4.9e-82 310.5 955 32.9
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.4e-81 308.9 649 37.8
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.7e-80 304.7 553 41.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 7.9e-80 303.1 556 41.7
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.3e-79 301.6 958 32.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.9e-79 300.8 958 32.5
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 5.1e-79 300.4 989 33.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.1e-76 292.7 638 36.4
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.8e-76 292.0 649 37.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.1e-76 291.2 962 32.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-75 288.1 946 31.3
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-75 288.1 944 30.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.6e-75 288.1 972 32.2
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 5.5e-73 280.4 857 32.4
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.7e-71 273.5 476 41.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.3e-69 269.2 848 31.8
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.3e-69 269.2 848 31.8
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.9e-68 263.5 848 31.6
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.2e-67 262.7 848 32.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 3.8e-66 257.7 587 35.8
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.8e-66 257.7 926 29.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 7.1e-65 253.4 645 34.1
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.1e-64 251.9 533 37.1
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 7.9e-64 250.0 564 37.9
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.9e-63 247.7 843 31.6
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 5.1e-63 247.3 542 36.2
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.3e-61 242.7 665 32.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.8e-61 241.5 907 30.8
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 5.3e-60 237.3 872 29.2
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.2e-59 236.1 888 29.3
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-59 235.7 874 29.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.3e-58 232.6 337 48.1
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 5.0e-58 230.7 565 36.1
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 5.5e-57 227.3 908 28.2
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.6e-56 225.7 548 33.2
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 7.9e-56 223.4 621 31.4
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 7.9e-56 223.4 392 41.1
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.3e-55 222.6 600 32.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.8e-55 222.2 842 28.9
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 4.3e-54 217.6 625 32.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 2.2e-53 215.3 602 32.4
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 2.2e-53 215.3 545 33.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.2e-53 215.3 839 29.0
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.7e-53 214.5 707 32.8
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.4e-52 212.6 625 32.2
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.4e-52 211.8 893 29.2
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.2e-51 209.5 895 27.7
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.0e-51 208.8 556 36.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 7.7e-51 206.8 545 34.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.0e-50 206.5 635 32.8
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.7e-50 205.7 753 30.4
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 3.8e-50 204.5 600 33.2
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.4e-49 202.6 804 29.4
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.9e-49 202.2 522 33.7
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 4.2e-49 201.1 558 32.6
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.6e-48 199.1 208 58.2
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.3e-47 195.3 767 29.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.0e-47 194.9 576 33.5
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.3e-45 189.5 923 27.7
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.7e-45 189.1 681 29.7
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.7e-45 188.0 673 30.9
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 6.3e-45 187.2 674 31.3
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.4e-44 186.0 817 28.2
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-44 185.3 817 28.8
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.1e-44 184.9 773 28.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.1e-44 184.9 586 32.1
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.0e-43 182.2 596 32.4
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.0e-42 179.9 608 31.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 2.2e-42 178.7 647 30.4
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 5.0e-42 177.6 613 30.2
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.5e-41 175.3 312 38.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.2e-41 174.9 921 27.9
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 7.2e-41 173.7 649 30.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.0e-39 169.9 702 28.6
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.0e-39 169.9 535 29.0
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.1e-38 166.4 565 31.7
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 3.3e-38 164.9 566 31.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 7.4e-38 163.7 608 28.9
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.1e-36 158.3 276 40.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 4.1e-36 157.9 226 49.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 4.5e-35 154.5 215 51.6
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.0e-34 153.3 601 30.0
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.2e-34 152.1 640 28.3
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 6.5e-34 150.6 584 30.0
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.1e-33 149.8 642 28.5
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.1e-32 145.6 526 31.9
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.8e-31 142.5 693 27.7
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-31 142.1 693 27.7
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 9.7e-30 136.7 349 36.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.2e-29 135.6 362 30.1
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.4e-28 132.1 400 32.2
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 6.5e-26 124.0 955 24.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.5e-25 122.9 366 32.2
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.9e-25 122.5 469 30.1
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-24 119.4 366 32.0
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.8e-22 110.2 366 31.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.5e-19 101.3 329 31.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.8e-18 98.2 407 29.2
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 2.5e-17 95.5 85 67.1
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.6e-16 92.8 884 23.0
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.0e-15 90.1 340 28.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.8e-15 89.4 599 24.9
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 3.0e-15 88.6 103 53.4
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.0e-10 73.6 115 47.0
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 4.7e-08 64.7 606 25.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 6.1e-08 64.3 606 25.6
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 8.0e-08 63.9 60 63.3
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 2.3e-07 62.4 211 34.6
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.6e-06 58.9 120 41.7
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.4e-06 58.5 120 41.7


User provided reference genes

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