Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.6e-138 496.1 255 100.0
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 2.3e-121 439.1 253 89.3
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.8e-94 349.7 262 73.3
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 9.1e-94 347.4 250 72.8
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.0e-93 346.3 253 73.5
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 2.6e-93 345.9 252 70.2
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 3.5e-93 345.5 244 71.7
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 3.5e-93 345.5 257 74.7
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 3.5e-93 345.5 242 73.6
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 4.5e-93 345.1 256 74.2
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 1.7e-92 343.2 244 70.5
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.9e-92 342.4 261 72.0
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 3.8e-92 342.0 255 73.3
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.1e-91 340.5 263 71.1
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.9e-91 339.7 261 70.9
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 2.5e-91 339.3 259 72.6
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 2.5e-91 339.3 259 72.6
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.2e-91 337.8 265 70.2
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.2e-90 337.0 265 70.2
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 3.6e-90 335.5 246 70.3
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 3.6e-90 335.5 256 70.7
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 4.7e-90 335.1 257 71.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 6.1e-90 334.7 252 69.4
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 6.1e-90 334.7 252 69.4
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.0e-89 334.0 259 72.2
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.4e-89 333.6 258 69.8
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.4e-89 333.6 251 68.9
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.8e-89 333.2 247 72.5
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 4.0e-89 332.0 252 69.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 4.0e-89 332.0 262 69.8
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 5.2e-89 331.6 250 69.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 5.2e-89 331.6 250 69.2
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 6.8e-89 331.3 259 68.3
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.8e-89 331.3 265 68.7
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.0e-88 329.7 251 68.5
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.6e-88 329.3 251 71.7
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 7.5e-88 327.8 259 71.0
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.8e-87 325.9 256 70.7
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.1e-86 323.9 253 70.4
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 7.0e-86 321.2 248 71.8
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 2.0e-85 319.7 250 65.6
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.7e-84 316.6 262 65.6
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 2.2e-84 316.2 260 69.6
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 2.9e-84 315.8 266 65.8
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 8.5e-84 314.3 267 65.9
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 3.2e-83 312.4 252 69.0
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.6e-82 310.1 260 68.5
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 2.1e-82 309.7 256 67.2
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.0e-81 307.4 190 84.2
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.0e-81 307.4 249 66.3
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.4e-81 307.0 254 63.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.4e-81 307.0 254 63.8
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 3.0e-81 305.8 203 76.4
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 4.0e-81 305.4 254 65.4
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 4.0e-81 305.4 229 67.2
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 6.8e-81 304.7 225 69.3
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.5e-80 303.5 253 64.0
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.0e-80 303.1 243 67.5
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.6e-80 302.8 253 63.6
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 4.4e-80 302.0 243 67.1
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 4.4e-80 302.0 256 65.2
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 7.5e-80 301.2 256 64.1
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 3.7e-79 298.9 258 63.2
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.7e-79 298.9 262 62.6
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 3.7e-79 298.9 266 63.5
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 8.3e-79 297.7 257 65.0
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.1e-78 297.4 255 65.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.4e-78 297.0 227 68.3
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.8e-78 296.6 251 63.3
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 2.4e-78 296.2 195 75.4
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 7.0e-78 294.7 255 64.3
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.0e-77 293.1 243 64.6
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 7.7e-77 291.2 242 63.2
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.1e-75 287.3 245 64.9
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.1e-75 287.3 249 56.6
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.6e-74 283.5 205 71.7
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.1e-74 283.1 200 68.0
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 4.7e-74 282.0 203 72.9
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 8.0e-74 281.2 255 60.8
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.0e-73 280.8 276 60.1
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.8e-73 280.0 257 63.4
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 8.9e-73 277.7 242 64.0
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.5e-72 276.9 257 61.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 4.4e-72 275.4 237 64.1
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.7e-71 273.5 241 61.8
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.2e-71 273.1 257 60.3
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.8e-71 272.7 264 59.1
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.8e-71 272.7 264 59.1
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.1e-70 270.8 256 60.2
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.8e-70 270.0 255 60.0
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.4e-70 269.6 242 58.7
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 2.4e-70 269.6 265 59.2
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 7.0e-70 268.1 259 59.5
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 5.9e-69 265.0 175 77.1
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.9e-68 262.7 201 66.7
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 4.3e-67 258.8 184 69.6
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 7.3e-67 258.1 232 63.4
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 7.3e-67 258.1 212 67.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 6.1e-66 255.0 232 58.6
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.0e-65 254.2 255 56.1
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 1.4e-65 253.8 151 87.4
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 8.9e-65 251.1 177 71.8
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 5.8e-64 248.4 205 62.4
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.7e-63 246.9 257 54.5
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 3.5e-61 239.2 177 64.4
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 6.0e-61 238.4 211 62.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.8e-57 226.9 146 78.8
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 1.5e-56 223.8 186 59.7
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 1.4e-54 217.2 175 61.1
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.9e-52 209.1 191 60.2
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 5.8e-48 195.3 184 58.2
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.3e-34 151.0 127 60.6
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.5e-32 144.1 117 66.7
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.6e-26 124.0 105 63.8
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 6.0e-21 105.5 71 70.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-17 94.0 136 41.9
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.0e-16 90.5 71 60.6
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-15 87.4 141 31.9
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 2.1e-13 80.5 47 80.9
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 1.4e-09 67.8 107 44.9
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.8e-07 59.7 55 54.5


User provided reference genes

Program Settings