Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-163 579.7 294 100.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 4.2e-143 511.5 303 87.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.5e-119 432.6 303 75.2
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.0e-84 316.6 306 58.8
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 5.8e-84 315.1 307 59.0
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-82 310.5 304 58.6
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 3.2e-82 309.3 304 58.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.4e-82 308.5 304 58.9
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.2e-81 307.4 299 59.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.6e-81 307.0 302 59.9
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.6e-81 307.0 305 58.4
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.6e-81 305.4 302 58.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.0e-81 305.1 311 56.6
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.7e-80 303.5 306 56.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 5.1e-80 302.0 296 58.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.1e-80 302.0 303 57.4
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 5.1e-80 302.0 311 56.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.5e-79 299.7 305 57.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.3e-79 298.9 299 59.2
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.3e-79 298.1 309 59.9
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 4.7e-78 295.4 306 58.2
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.7e-78 295.4 294 59.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 8.1e-78 294.7 306 56.5
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 8.1e-78 294.7 304 56.6
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 8.9e-77 291.2 297 58.9
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.2e-76 290.8 314 56.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.2e-76 290.8 306 56.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.6e-76 289.7 315 55.6
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.8e-76 288.5 307 56.0
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.9e-76 287.7 305 54.8
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.9e-74 283.5 310 53.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.2e-74 282.7 306 55.2
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.2e-74 282.7 305 55.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.1e-74 282.3 303 55.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.4e-74 282.0 300 56.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 7.1e-74 281.6 307 55.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.2e-74 281.2 305 53.4
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 9.2e-74 281.2 308 56.8
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.6e-73 280.4 307 54.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.1e-73 280.0 297 56.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.1e-73 280.0 300 54.7
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.1e-73 280.0 294 56.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.5e-73 279.3 302 55.0
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.6e-73 278.9 297 56.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.8e-73 278.1 300 53.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.0e-72 277.7 300 54.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.3e-72 276.6 307 54.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.3e-72 276.6 303 53.8
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 6.6e-72 275.0 305 54.1
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 9.6e-71 271.2 301 56.8
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.4e-69 266.5 306 53.6
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.1e-69 266.2 298 55.7
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.0e-69 265.8 305 54.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 6.9e-69 265.0 302 55.3
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.5e-68 263.8 302 54.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.6e-68 263.1 310 52.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.9e-68 261.2 250 59.6
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.3e-67 260.8 301 52.8
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.7e-67 260.4 294 52.0
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.9e-67 259.6 306 50.0
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.9e-67 259.6 298 53.0
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.8e-67 259.2 307 50.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 4.9e-67 258.8 252 59.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.9e-67 258.8 305 51.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 6.4e-67 258.5 295 52.9
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 6.4e-67 258.5 298 53.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 6.4e-67 258.5 296 53.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.2e-66 255.8 300 52.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.4e-66 255.4 300 52.3
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.4e-66 255.4 306 52.3
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 9.3e-66 254.6 305 52.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.7e-65 253.1 294 53.4
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.5e-65 252.7 297 51.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.5e-65 252.7 306 52.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.8e-65 251.5 300 52.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.0e-64 251.1 306 52.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.3e-64 250.8 306 50.7
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.7e-64 250.4 303 50.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.5e-63 247.3 227 59.9
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.5e-63 246.5 281 52.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.5e-63 246.5 297 48.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.3e-63 245.7 297 49.2
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.3e-63 245.7 280 51.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 9.6e-63 244.6 302 52.0
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.3e-62 244.2 297 52.2
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.6e-62 243.8 291 51.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.6e-62 243.8 288 50.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.6e-62 243.8 285 51.9
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.1e-61 241.1 295 48.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.1e-61 241.1 298 52.3
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.8e-61 240.4 298 50.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.4e-61 240.0 270 52.2
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.4e-61 240.0 270 52.2
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.0e-61 239.2 299 48.2
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 9.0e-61 238.0 310 49.0
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.0e-60 236.9 232 58.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.6e-60 236.5 299 49.8
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.8e-60 235.3 301 49.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.6e-60 235.0 230 56.1
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 7.6e-60 235.0 296 47.6
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 9.9e-60 234.6 256 53.9
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.2e-59 233.4 309 48.9
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.9e-59 233.0 297 49.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.2e-58 229.6 300 48.7
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.2e-57 227.6 294 46.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.2e-57 227.6 302 49.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.1e-57 226.9 306 49.3
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.1e-57 226.9 300 48.3
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 6.7e-56 221.9 320 47.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 7.4e-55 218.4 330 43.9
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.1e-53 214.5 297 47.1
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.0e-53 212.6 294 45.9
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.2e-51 206.8 296 42.2
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.5e-49 199.5 294 43.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.8e-48 197.2 194 58.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.2e-46 188.7 189 54.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.3e-45 185.7 141 67.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.7e-41 173.3 312 41.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.5e-34 150.2 286 42.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.5e-34 150.2 286 42.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.1e-33 147.1 286 41.3
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.1e-31 141.4 289 38.4
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 4.8e-30 136.0 328 35.7
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.2e-30 135.2 100 71.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-27 127.9 128 57.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.2e-25 121.3 230 40.4
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.3e-23 113.2 251 36.3
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.8e-21 107.5 98 57.1
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.1e-21 106.3 425 28.7
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 9.1e-21 105.1 132 51.5
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 8.5e-19 98.6 252 36.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.2e-18 96.3 225 37.3
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.5e-18 95.9 126 46.0
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 4.7e-17 92.8 74 68.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.9e-17 92.0 99 47.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.3e-14 82.4 74 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.5e-11 72.4 239 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.5e-10 69.3 228 32.9
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.3e-08 63.9 147 36.7
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 3.7e-06 56.6 38 73.7


User provided reference genes

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