Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.0e-26 120.6 71 100.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.3e-10 68.6 66 65.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 8.6e-10 66.6 58 63.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.2e-08 62.8 58 69.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.6e-08 62.4 61 62.3
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-08 62.4 55 65.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.1e-08 62.0 59 61.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.8e-08 61.6 63 57.1
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.8e-08 61.6 59 61.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-08 61.2 58 55.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.6e-08 61.2 69 55.1
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.6e-08 61.2 59 64.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.7e-08 60.8 61 62.3
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 4.7e-08 60.8 61 59.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.2e-08 60.5 55 63.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.2e-08 60.5 55 63.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 8.1e-08 60.1 63 57.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 8.1e-08 60.1 61 62.3
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.1e-08 60.1 63 58.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.1e-07 59.7 61 60.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.1e-07 59.7 59 67.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.1e-07 59.7 61 62.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.1e-07 59.7 59 62.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.4e-07 59.3 61 59.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-07 59.3 58 63.8
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.4e-07 59.3 64 60.9
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.8e-07 58.9 66 54.5
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.8e-07 58.9 61 60.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.8e-07 58.9 59 57.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.4e-07 58.5 59 66.1
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.4e-07 58.5 59 69.5
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.4e-07 58.5 61 60.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.1e-07 58.2 61 60.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-07 58.2 59 67.8
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.1e-07 58.2 59 69.5
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 3.1e-07 58.2 67 58.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.0e-07 57.8 60 56.7
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.0e-07 57.8 60 56.7
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.0e-07 57.8 58 63.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 5.2e-07 57.4 53 67.9
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.2e-07 57.4 66 57.6
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 5.2e-07 57.4 63 58.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.8e-07 57.0 64 57.8
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.9e-07 56.6 66 51.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.9e-07 56.6 66 51.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.9e-07 56.6 59 64.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 8.9e-07 56.6 59 57.6
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 8.9e-07 56.6 60 66.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.9e-07 56.6 56 66.1
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.9e-07 56.6 56 66.1
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-06 56.2 64 62.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.5e-06 55.8 60 63.3
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.5e-06 55.8 59 57.6
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-06 55.8 62 56.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.5e-06 55.8 59 61.0
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.5e-06 55.8 59 57.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 2.0e-06 55.5 57 61.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.0e-06 55.5 57 63.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.0e-06 55.5 60 63.3
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.0e-06 55.5 66 59.1
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 2.0e-06 55.5 61 55.7
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.6e-06 55.1 57 59.6
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.6e-06 55.1 57 56.1
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.4e-06 54.7 63 47.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.4e-06 54.7 58 62.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.4e-06 54.7 60 61.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.4e-06 54.7 59 57.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.4e-06 54.7 59 55.9
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.4e-06 54.7 60 61.7
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.4e-06 54.3 64 57.8
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-06 54.3 59 59.3
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.8e-06 53.9 58 58.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.6e-06 53.5 55 63.6
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.6e-06 53.5 55 63.6
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.6e-06 53.5 67 55.2
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 7.6e-06 53.5 57 54.4
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.6e-06 53.5 60 61.7
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 9.9e-06 53.1 60 56.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 9.9e-06 53.1 64 57.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.9e-06 53.1 61 60.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 9.9e-06 53.1 60 61.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 9.9e-06 53.1 56 58.9


User provided reference genes

Program Settings