Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.7e-106 389.4 202 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 4.5e-80 301.6 204 77.5
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.7e-79 299.7 203 77.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.4e-76 290.0 204 77.0
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.4e-76 290.0 203 75.9
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.2e-75 287.0 203 75.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.5e-75 286.6 202 74.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.8e-74 282.3 204 73.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-73 280.4 204 74.5
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-73 280.4 204 74.5
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.4e-73 280.0 202 73.8
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.4e-73 279.3 207 73.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.1e-73 278.5 204 74.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 7.0e-73 277.7 205 71.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 7.0e-73 277.7 203 73.9
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.2e-72 276.9 205 73.7
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.2e-72 276.9 201 74.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-72 276.6 205 73.2
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.0e-72 276.2 202 72.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.0e-72 276.2 203 72.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.9e-72 274.6 184 76.1
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.8e-72 274.2 203 70.9
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.3e-71 272.7 203 72.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 3.9e-71 271.9 205 74.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 5.0e-71 271.6 204 72.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.0e-71 271.6 196 73.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 6.6e-71 271.2 203 71.9
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.6e-71 271.2 204 71.1
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.6e-71 270.8 206 71.8
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 8.6e-71 270.8 211 71.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.1e-70 270.4 205 72.2
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.1e-70 270.4 204 70.6
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.5e-70 270.0 204 69.6
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 3.3e-70 268.9 207 70.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-70 268.5 207 70.0
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 4.3e-70 268.5 203 70.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 5.6e-70 268.1 203 70.4
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 9.5e-70 267.3 202 69.8
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.6e-69 266.5 206 70.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.1e-69 266.2 209 71.8
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.7e-69 265.0 208 69.2
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 8.0e-69 264.2 202 69.8
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.0e-68 263.8 204 70.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.0e-68 263.8 211 67.8
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.8e-68 263.1 235 61.7
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.3e-68 262.7 203 68.0
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.2e-68 261.5 203 69.5
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.5e-67 260.0 168 81.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.6e-67 259.2 221 65.2
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.6e-67 259.2 170 77.6
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.6e-67 259.2 206 71.4
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.4e-67 258.8 203 69.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 4.4e-67 258.5 204 68.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 7.5e-67 257.7 181 74.6
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.8e-67 257.3 206 70.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.7e-66 256.5 203 69.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.2e-66 256.1 212 66.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.9e-66 255.8 170 77.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.9e-66 255.8 189 72.0
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 4.9e-66 255.0 210 68.6
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 8.3e-66 254.2 204 69.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.4e-65 253.4 174 77.0
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.9e-65 253.1 178 74.7
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.9e-65 253.1 178 74.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.9e-65 253.1 208 66.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.1e-65 251.9 212 65.6
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 7.0e-65 251.1 192 69.8
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.6e-64 250.0 209 68.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.0e-64 249.6 169 76.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.7e-64 249.2 208 64.9
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 2.7e-64 249.2 145 84.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 6.0e-64 248.1 145 82.1
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 6.0e-64 248.1 204 69.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.7e-63 246.5 150 82.0
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.3e-63 246.1 211 65.4
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.3e-63 246.1 168 76.8
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.0e-63 245.7 142 85.2
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.9e-63 245.4 186 73.1
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 5.0e-63 245.0 168 76.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-62 243.8 145 81.4
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.1e-62 243.8 160 76.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.5e-62 243.4 164 75.6
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.5e-62 243.4 185 69.2
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.5e-62 242.7 142 84.5
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 4.3e-62 241.9 160 77.5
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 5.6e-62 241.5 142 82.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.3e-62 241.1 145 80.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 9.5e-62 240.7 212 63.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 9.5e-62 240.7 142 81.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.2e-61 240.4 205 65.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.2e-61 240.4 204 62.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 3.6e-61 238.8 148 81.8
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.6e-61 238.8 201 67.7
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.2e-61 238.0 249 56.6
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 6.2e-61 238.0 202 67.3
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 8.0e-61 237.7 201 67.2
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.1e-60 237.3 137 83.2
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.1e-60 237.3 145 78.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.4e-60 236.9 145 80.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 5.2e-60 235.0 202 66.3
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 6.8e-60 234.6 145 78.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.0e-59 233.0 200 63.0
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 9.8e-59 230.7 202 60.9
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-58 229.9 145 76.6
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.7e-58 229.9 138 81.9
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.9e-58 229.2 145 79.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.1e-57 227.3 243 56.8
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-57 226.9 218 62.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-57 226.9 218 62.4
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.2e-57 225.7 205 59.0
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.2e-57 225.7 145 77.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 5.4e-57 224.9 171 71.3
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 5.4e-57 224.9 171 71.3
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 7.1e-57 224.6 146 76.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 7.1e-57 224.6 146 76.0
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-56 223.8 145 76.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.8e-56 221.1 189 61.9
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.3e-55 220.3 207 59.4
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.7e-55 219.9 174 66.1
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-55 218.8 218 60.6
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 8.6e-55 217.6 151 73.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-54 217.2 145 77.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.5e-54 216.1 193 61.7
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.6e-54 214.9 145 73.8
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.1e-53 213.0 174 64.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.1e-53 213.0 152 69.1
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.8e-52 209.9 153 67.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-51 207.2 148 69.6
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.5e-51 206.8 160 71.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.4e-51 205.3 156 68.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.8e-51 204.9 173 62.4
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 7.6e-51 204.5 156 66.7
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 9.9e-51 204.1 200 56.5
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.7e-50 203.4 123 79.7
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.2e-50 203.0 160 64.4
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.2e-48 197.2 155 65.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 3.9e-47 192.2 123 76.4
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.5e-46 190.3 170 61.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 9.6e-46 187.6 228 52.2
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 5.2e-44 181.8 185 54.6
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.9e-44 181.0 154 59.7
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 8.4e-42 174.5 106 79.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.4e-42 174.5 143 59.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-40 169.5 164 59.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.0e-39 167.5 150 60.0
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-39 165.2 146 61.6
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.5e-38 163.7 116 70.7
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-37 159.5 106 76.4
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 6.9e-36 154.8 89 83.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 9.0e-36 154.5 92 79.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.8e-32 141.4 82 82.9
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 6.6e-31 138.3 116 63.8
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 6.2e-29 131.7 152 52.0
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 3.8e-26 122.5 142 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.0e-24 115.2 98 57.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.8e-20 103.6 140 39.3
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 4.0e-20 102.4 83 65.1
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 4.6e-16 89.0 170 32.9
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.1e-12 76.3 77 53.2
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.1e-12 76.3 49 75.5
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.5e-11 73.9 137 37.2
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.1e-08 63.5 54 59.3
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 7.4e-06 55.1 39 79.5


User provided reference genes

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