Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.9e-171 604.4 305 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 7.5e-103 377.9 309 66.7
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 7.8e-100 367.9 289 67.5
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.3e-99 367.1 289 67.5
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.6e-99 364.8 317 64.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-98 364.0 289 66.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.5e-98 362.8 305 64.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.6e-97 360.1 309 63.8
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-96 356.7 308 60.4
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.8e-96 356.7 305 63.0
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.2e-95 354.0 289 66.8
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-95 353.2 321 58.6
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 7.1e-93 344.7 305 60.3
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.6e-92 343.6 305 60.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.1e-92 343.2 306 60.8
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-92 342.8 332 59.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.5e-92 342.4 305 62.0
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.5e-92 342.4 312 60.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.5e-90 337.0 284 65.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.5e-90 337.0 309 60.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.9e-90 336.7 311 60.1
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.2e-89 334.0 315 57.8
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.6e-89 333.6 308 57.8
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-89 333.6 312 59.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.7e-89 332.0 315 57.5
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 6.2e-89 331.6 305 56.4
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-88 330.9 296 62.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.1e-88 330.9 314 58.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.8e-88 330.1 306 57.5
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.3e-88 329.7 314 58.0
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.3e-88 329.7 323 58.5
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-88 329.3 302 57.9
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.9e-88 327.8 304 61.5
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.0e-87 326.6 303 60.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-87 326.2 304 57.6
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-87 326.2 304 57.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.6e-87 326.2 304 57.6
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.6e-87 326.2 312 58.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.8e-87 325.1 304 57.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.8e-87 325.1 304 57.6
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.3e-86 323.9 314 57.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-86 323.6 303 58.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.7e-86 323.6 308 56.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.2e-86 323.2 301 62.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.2e-86 323.2 292 63.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.2e-86 323.2 314 57.3
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.9e-86 322.8 301 57.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.8e-86 322.4 308 57.5
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.8e-86 322.4 304 57.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.4e-86 321.6 335 58.2
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 8.4e-86 321.2 310 55.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-85 320.9 304 56.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.9e-85 320.1 304 55.6
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.4e-85 319.7 304 56.2
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-85 319.7 304 56.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.4e-85 319.7 304 56.2
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.4e-85 319.7 304 56.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.1e-85 318.2 321 54.2
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 9.2e-85 317.8 307 58.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-84 316.6 304 55.6
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 7.8e-84 314.7 309 56.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-82 310.8 304 56.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.1e-82 310.8 307 57.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.1e-82 310.8 309 55.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.5e-82 310.5 306 55.6
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-82 310.5 306 55.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.5e-82 310.5 306 55.6
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-82 310.1 306 55.6
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.5e-82 309.7 308 55.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 3.3e-82 309.3 302 56.6
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.3e-82 309.3 305 56.4
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 4.3e-82 308.9 304 55.6
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 9.6e-82 307.8 269 60.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 9.6e-82 307.8 307 54.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.2e-81 307.4 310 52.6
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.6e-81 307.0 305 56.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.1e-80 304.3 390 49.5
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.4e-80 303.1 308 52.9
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 4.0e-80 302.4 314 55.4
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 4.0e-80 302.4 313 53.7
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 5.2e-80 302.0 290 57.2
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.9e-80 301.6 313 55.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 8.9e-80 301.2 310 51.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.2e-79 300.8 300 53.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.4e-79 299.3 309 53.4
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.4e-79 298.9 272 57.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.4e-79 298.9 310 54.8
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 5.8e-79 298.5 310 51.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.9e-78 296.2 306 54.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.8e-78 295.8 318 53.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 6.4e-78 295.0 306 54.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 8.4e-78 294.7 310 52.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 9.3e-77 291.2 310 51.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.3e-77 291.2 313 52.4
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.7e-76 289.7 307 52.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 7.8e-76 288.1 309 52.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 2.3e-75 286.6 310 52.9
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.5e-74 283.9 308 51.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.3e-74 282.3 310 50.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.3e-74 282.3 307 52.1
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 5.6e-74 282.0 301 50.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 5.6e-74 282.0 309 51.1
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.8e-73 279.6 315 50.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.6e-73 279.3 283 56.2
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.1e-72 277.7 314 49.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 4.0e-72 275.8 310 49.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.0e-72 274.6 252 60.3
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.7e-70 270.4 311 48.9
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.9e-70 268.9 304 49.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.9e-70 268.9 317 49.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 4.2e-69 265.8 306 50.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.4e-69 265.4 280 55.0
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.7e-68 263.1 307 48.9
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.6e-68 262.3 308 48.1
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 6.0e-68 261.9 313 47.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 7.9e-68 261.5 307 47.9
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.0e-67 261.2 314 48.7
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 2.3e-67 260.0 410 39.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 3.9e-67 259.2 309 49.2
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 5.1e-67 258.8 311 47.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 5.6e-66 255.4 303 47.9
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.7e-65 252.7 317 46.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 9.0e-64 248.1 251 51.0
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.6e-63 246.5 252 52.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.6e-63 246.5 251 51.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.4e-63 246.1 307 46.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.3e-62 244.2 313 45.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.2e-62 243.4 310 44.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 9.3e-61 238.0 284 50.7
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.6e-60 237.3 315 44.8
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.3e-59 234.2 311 43.4
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.0e-59 233.0 308 43.8
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 8.7e-59 231.5 309 44.7
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.3e-58 229.6 312 45.2
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.4e-53 214.2 206 56.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 7.1e-53 211.8 318 44.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.7e-49 199.5 220 50.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.3e-42 176.4 250 38.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 5.9e-39 165.6 156 55.8
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.1e-37 161.4 170 52.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 6.7e-35 152.1 163 50.9
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.2e-29 132.1 135 52.6
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.6e-28 131.0 177 44.6
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.1e-28 130.6 135 51.9
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.0e-28 128.6 114 57.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 5.2e-27 125.9 318 30.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.2e-27 125.9 306 29.4
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.1e-21 108.2 310 26.5
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.2e-21 106.3 89 59.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 8.0e-20 102.1 114 52.6
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.0e-19 101.7 280 25.7
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.7e-19 99.0 90 56.7
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-18 97.8 88 56.8
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.3e-16 89.4 101 48.5
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.1e-13 81.6 123 43.9
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 6.1e-12 75.9 96 40.6
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.3e-11 73.9 77 48.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.3e-11 73.9 71 50.7
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.3e-11 73.9 71 50.7
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.3e-11 73.9 71 50.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 7.5e-10 68.9 87 43.7


User provided reference genes

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