Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 6.6e-28 126.7 67 100.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.3e-23 112.5 66 89.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 4.2e-14 80.9 66 68.2
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.2e-13 79.3 63 66.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.2e-13 79.3 63 66.7
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 2.1e-13 78.6 66 66.7
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 3.5e-13 77.8 61 67.2
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 3.5e-13 77.8 66 62.1
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 4.6e-13 77.4 66 60.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.6e-13 77.4 66 62.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 6.0e-13 77.0 66 60.6
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 7.9e-13 76.6 66 60.6
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.0e-12 76.3 66 60.6
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.0e-12 76.3 60 65.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.3e-12 75.9 61 65.6
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.8e-12 75.5 61 63.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.3e-12 75.1 66 59.1
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.0e-12 74.7 61 62.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 3.9e-12 74.3 63 65.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.9e-12 74.3 58 69.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.1e-12 73.9 62 59.7
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 5.1e-12 73.9 66 62.1
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.7e-12 73.2 66 59.1
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 8.7e-12 73.2 64 59.4
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 8.7e-12 73.2 57 66.7
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 8.7e-12 73.2 57 68.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.5e-11 72.4 61 60.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.5e-11 72.4 66 62.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.9e-11 72.0 66 57.6
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.9e-11 72.0 62 54.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.9e-11 72.0 62 54.8
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.9e-11 72.0 61 60.7
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.9e-11 72.0 61 60.7
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.9e-11 72.0 56 69.6
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.9e-11 72.0 56 69.6
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 2.5e-11 71.6 62 58.1
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 2.5e-11 71.6 62 58.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 2.5e-11 71.6 62 54.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.5e-11 71.6 62 54.8
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.5e-11 71.6 58 63.8
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 2.5e-11 71.6 63 60.3
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.5e-11 71.6 61 59.0
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.3e-11 71.2 62 58.1
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.3e-11 71.2 63 55.6
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.3e-11 70.9 62 56.5
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.3e-11 70.9 66 57.6
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 4.3e-11 70.9 66 62.1
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 4.3e-11 70.9 62 56.5
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 5.6e-11 70.5 61 60.7
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.3e-10 69.3 61 59.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.6e-10 68.9 63 65.1
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.1e-10 68.6 58 62.1
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 3.7e-10 67.8 61 57.4
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.8e-10 67.4 61 57.4
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 4.8e-10 67.4 62 62.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 4.8e-10 67.4 69 58.0
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.8e-10 67.4 60 58.3
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 6.2e-10 67.0 62 53.2
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 6.2e-10 67.0 61 57.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 6.2e-10 67.0 63 54.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 6.2e-10 67.0 66 56.1
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 6.2e-10 67.0 61 57.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.1e-09 66.2 59 54.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.4e-09 65.9 53 62.3
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.8e-09 65.5 60 56.7
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.8e-09 65.5 62 54.8
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.8e-09 65.5 66 57.6
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-09 65.5 67 61.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.8e-09 65.5 61 55.7
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.4e-09 65.1 61 60.7
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.4e-09 65.1 57 54.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.1e-09 64.7 61 55.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 5.3e-09 63.9 61 54.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 5.3e-09 63.9 63 52.4
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.9e-09 63.5 61 54.1
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 6.9e-09 63.5 61 57.4
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 9.0e-09 63.2 61 52.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.0e-09 63.2 62 53.2
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.0e-09 63.2 59 50.8
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 9.0e-09 63.2 63 52.4
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.0e-09 63.2 53 62.3
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 9.0e-09 63.2 61 54.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-08 62.8 62 53.2
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.5e-08 62.4 59 55.9
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.0e-08 62.0 63 47.6
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.6e-08 61.6 62 46.8
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.6e-08 61.6 61 49.2
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.4e-08 61.2 61 52.5
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.4e-08 61.2 62 56.5
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 7.6e-08 60.1 64 50.0
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 7.6e-08 60.1 61 47.5
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 7.6e-08 60.1 68 51.5
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.0e-07 59.7 56 57.1
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.3e-07 59.3 55 56.4
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.7e-07 58.9 66 48.5
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.7e-07 58.9 66 48.5
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.7e-07 58.9 64 53.1
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.2e-07 58.5 57 50.9
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.2e-07 58.5 55 56.4
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.9e-07 58.2 69 47.8
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.8e-07 57.8 53 58.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.9e-07 57.4 57 47.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 6.5e-07 57.0 65 50.8
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 6.5e-07 57.0 62 56.5
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.4e-07 56.6 61 49.2
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.4e-07 56.6 57 59.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 8.4e-07 56.6 54 55.6
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.1e-06 56.2 55 56.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.1e-06 56.2 55 56.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.5e-06 55.1 66 47.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.5e-06 55.1 66 47.0
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.5e-06 55.1 61 42.6
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.5e-06 55.1 54 55.6
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.2e-06 54.7 64 50.0


User provided reference genes

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