Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.4e-60 236.1 121 100.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.3e-42 176.4 121 72.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.3e-42 176.4 113 79.6
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.3e-42 176.4 113 79.6
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.2e-42 175.6 118 74.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 5.0e-42 174.5 121 72.7
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 6.5e-42 174.1 112 75.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.5e-41 172.9 109 79.8
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.9e-41 172.6 115 73.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.9e-41 172.6 109 78.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.9e-41 172.6 108 78.7
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 5.5e-41 171.0 110 80.0
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 7.2e-41 170.6 120 72.5
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.2e-41 170.6 113 76.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 9.5e-41 170.2 112 75.9
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 9.5e-41 170.2 118 71.2
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 9.5e-41 170.2 113 77.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 9.5e-41 170.2 113 77.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.5e-41 170.2 108 79.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.5e-41 170.2 118 72.0
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.2e-40 169.9 112 77.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.6e-40 169.5 112 75.9
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.6e-40 169.5 120 72.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.1e-40 169.1 115 73.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.1e-40 169.1 112 75.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.1e-40 169.1 109 78.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.8e-40 168.7 101 81.2
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.6e-40 168.3 120 69.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 4.7e-40 167.9 115 71.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.1e-40 167.5 112 75.9
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 8.0e-40 167.2 112 74.1
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.0e-39 166.8 115 69.6
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.0e-39 166.8 110 77.3
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.4e-39 166.4 113 75.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-39 166.0 110 76.4
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.3e-39 165.6 114 72.8
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.3e-39 165.6 110 78.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 2.3e-39 165.6 108 78.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.0e-39 165.2 113 75.2
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.0e-39 164.9 113 75.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.2e-39 164.5 114 71.1
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 6.8e-39 164.1 121 70.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.2e-38 163.3 118 65.3
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-38 162.9 120 69.2
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-38 162.9 120 69.2
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-38 162.9 120 69.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-38 162.5 80 98.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 2.6e-38 162.2 120 66.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-38 161.8 110 73.6
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-38 161.8 110 73.6
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.4e-38 161.8 118 66.1
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.4e-38 161.8 115 69.6
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 4.4e-38 161.4 120 68.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.4e-38 161.4 120 68.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.4e-38 161.4 113 73.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 5.7e-38 161.0 112 73.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.5e-38 160.6 120 67.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 7.5e-38 160.6 110 75.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.5e-38 160.6 115 72.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 7.5e-38 160.6 102 80.4
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 9.8e-38 160.2 119 67.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.3e-37 159.8 118 67.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.3e-37 159.8 121 68.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.7e-37 158.3 102 77.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.7e-37 158.3 101 77.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 4.9e-37 157.9 110 70.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.9e-37 157.9 102 77.5
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.9e-37 157.9 102 76.5
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 8.3e-37 157.1 103 77.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.4e-36 156.4 109 74.3
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-36 156.0 103 75.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-36 156.0 103 75.7
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.8e-36 156.0 112 73.2
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.8e-36 156.0 112 73.2
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.1e-36 155.2 109 71.6
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 5.4e-36 154.5 119 67.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 5.4e-36 154.5 120 66.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 7.0e-36 154.1 112 72.3
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 9.2e-36 153.7 103 73.8
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.6e-35 152.9 109 72.5
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.6e-35 152.9 109 72.5
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.6e-35 152.9 109 72.5
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.0e-35 152.5 112 70.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.7e-35 152.1 119 68.1
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.5e-35 151.8 101 74.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.9e-35 151.0 111 69.4
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.3e-34 149.8 111 70.3
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.3e-34 149.8 102 74.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.7e-34 149.4 109 70.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.7e-34 149.4 109 70.6
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.8e-34 148.3 121 62.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.8e-34 148.3 120 64.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.9e-33 146.0 99 74.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-33 145.6 102 72.5
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.6e-33 144.4 119 63.0
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.2e-32 143.3 110 68.2
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.6e-32 142.9 121 62.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.7e-32 141.4 113 66.4
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 6.1e-32 141.0 102 67.6
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.1e-32 141.0 95 75.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-31 140.2 119 58.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.3e-31 139.0 113 67.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.2e-30 136.7 107 65.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-30 136.7 101 70.3
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-30 136.7 113 64.6
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.5e-30 136.3 113 62.8
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.4e-30 135.2 113 63.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.4e-30 135.2 100 69.0
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.7e-30 134.4 94 75.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 9.8e-30 133.7 119 58.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.9e-29 132.1 120 57.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.4e-29 131.0 113 65.5
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 6.4e-29 131.0 101 65.3
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-28 130.2 90 68.9
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 4.1e-28 128.3 104 66.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.2e-27 126.7 101 58.4
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-27 126.7 120 55.8
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-27 126.3 120 58.3
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.0e-27 125.9 114 64.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.0e-26 122.1 113 57.5
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.9e-26 121.7 114 61.4
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.6e-26 120.6 122 54.1
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.5e-25 119.8 111 55.9
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.5e-25 117.1 103 63.1
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.5e-25 117.1 103 63.1
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.6e-24 116.3 105 59.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 8.0e-24 114.0 104 61.5
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.0e-23 113.6 108 55.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.8e-23 112.8 104 57.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 5.2e-23 111.3 101 58.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 6.8e-23 110.9 107 55.1
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.9e-23 110.5 82 69.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.9e-23 110.5 102 55.9
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.2e-22 110.2 113 54.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-22 110.2 105 57.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.6e-22 109.0 104 55.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 5.8e-22 107.8 105 49.5
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 5.8e-22 107.8 106 54.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.1e-20 103.6 93 61.3
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.4e-20 103.2 100 55.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 9.2e-20 100.5 103 54.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.7e-18 96.3 63 81.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.3e-17 91.7 69 69.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 8.1e-16 87.4 51 86.3
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.4e-15 86.7 101 48.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.4e-15 86.7 107 45.8
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.8e-15 86.3 52 78.8
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.0e-15 85.1 110 50.0
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 5.2e-15 84.7 105 44.8
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 3.4e-14 82.0 55 76.4
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.4e-14 81.6 61 68.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.9e-13 79.0 53 73.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 4.9e-13 78.2 68 55.9
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 8.3e-13 77.4 64 67.2
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.2e-12 75.5 81 48.1
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.3e-10 69.3 102 38.2
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.9e-10 68.6 108 39.8
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.9e-10 68.6 46 73.9
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.5e-09 63.9 40 72.5
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.1e-07 60.5 65 44.6
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.3e-07 59.3 73 49.3
DCAR_000724 Daucus carota HOM05D004041 ORTHO05D004564 2.0e-06 56.2 61 52.5
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-06 55.8 52 50.0
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 4.4e-06 55.1 49 55.1


User provided reference genes

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