Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 4.0e-75 284.6 142 100.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.3e-44 183.3 113 81.4
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 3.7e-44 181.8 99 89.9
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 4.8e-44 181.4 99 88.9
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 8.2e-44 180.6 99 85.9
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.1e-43 180.3 101 87.1
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.4e-43 179.9 99 87.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.4e-43 179.1 99 87.9
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 5.3e-43 177.9 103 84.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 9.1e-43 177.2 100 85.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 87.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 87.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 87.9
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 87.9
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 87.9
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 9.1e-43 177.2 99 84.8
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.2e-42 176.8 99 83.8
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.2e-42 176.8 101 81.2
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-42 176.8 111 80.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.2e-42 176.8 111 80.2
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.5e-42 176.4 99 85.9
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.0e-42 176.0 99 83.8
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 2.0e-42 176.0 99 82.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.6e-42 175.6 103 80.6
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 2.6e-42 175.6 99 81.8
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.4e-42 175.3 99 85.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 3.4e-42 175.3 111 78.4
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.4e-42 175.3 99 86.9
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 5.9e-42 174.5 99 85.9
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 5.9e-42 174.5 99 85.9
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-42 174.5 99 83.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.7e-42 174.1 99 85.9
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 7.7e-42 174.1 99 82.8
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.0e-41 173.7 99 81.8
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.0e-41 173.7 99 82.8
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.0e-41 173.7 100 85.0
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.3e-41 173.3 99 82.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.3e-41 173.3 95 87.4
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.3e-41 173.3 99 83.8
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.7e-41 172.9 99 82.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-41 172.9 99 82.8
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.7e-41 172.9 99 83.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.7e-41 172.9 102 82.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.2e-41 172.6 99 80.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.2e-41 172.6 99 80.8
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.2e-41 172.6 99 80.8
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.9e-41 172.2 99 80.8
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.9e-41 172.2 99 82.8
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.8e-41 171.8 99 81.8
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 3.8e-41 171.8 99 81.8
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 3.8e-41 171.8 99 81.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 3.8e-41 171.8 99 80.8
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 5.0e-41 171.4 99 81.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.0e-41 171.4 99 81.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 6.5e-41 171.0 101 76.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 6.5e-41 171.0 99 81.8
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 6.5e-41 171.0 100 80.0
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.5e-41 170.6 99 81.8
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 8.5e-41 170.6 99 83.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 81.8
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.1e-40 170.2 99 80.8
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.4e-40 169.9 99 84.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.4e-40 169.9 99 84.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.4e-40 169.9 99 80.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.9e-40 169.5 99 80.8
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.9e-40 169.5 99 80.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.9e-40 169.5 99 80.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.9e-40 169.5 111 77.5
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.9e-40 169.5 99 78.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 2.5e-40 169.1 97 82.5
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.5e-40 169.1 99 79.8
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.2e-40 168.7 99 80.8
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.2e-40 168.7 99 79.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.2e-40 168.7 99 79.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 4.2e-40 168.3 99 78.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 4.2e-40 168.3 99 79.8
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 4.2e-40 168.3 99 81.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 4.2e-40 168.3 99 76.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.2e-40 168.3 101 74.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.5e-40 167.9 99 79.8
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 5.5e-40 167.9 98 79.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 5.5e-40 167.9 99 78.8
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 5.5e-40 167.9 99 77.8
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.2e-40 167.5 99 79.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 9.4e-40 167.2 99 78.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 9.4e-40 167.2 99 80.8
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-39 166.8 99 78.8
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-39 166.8 99 78.8
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.2e-39 166.8 99 78.8
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.2e-39 166.8 99 77.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.1e-39 166.0 99 77.8
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.7e-39 165.6 99 77.8
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 2.7e-39 165.6 99 79.8
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.7e-39 165.6 99 79.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.7e-39 165.6 99 79.8
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 3.6e-39 165.2 99 79.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.7e-39 164.9 99 75.8
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.9e-39 164.1 99 75.8
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 7.9e-39 164.1 99 77.8
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.0e-38 163.7 101 76.2
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.4e-38 163.3 99 76.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-38 163.3 101 72.3
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-38 163.3 101 72.3
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.3e-38 162.5 99 72.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 3.0e-38 162.2 99 74.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 3.0e-38 162.2 99 73.7
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 3.9e-38 161.8 99 78.8
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 8.8e-38 160.6 99 77.8
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 8.8e-38 160.6 99 77.8
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-37 160.2 99 77.8
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.5e-37 159.8 99 77.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.6e-37 159.1 99 76.8
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 3.3e-37 158.7 99 76.8
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.2e-36 156.0 101 73.3
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.8e-36 155.6 99 75.8
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 6.3e-36 154.5 99 73.7
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 6.3e-36 154.5 99 74.7
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 8.2e-36 154.1 99 74.7
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.4e-35 153.3 97 73.2
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.1e-35 152.1 92 78.3
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-35 151.4 99 69.7
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 5.3e-35 151.4 99 70.7
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.0e-34 149.4 99 70.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-33 146.7 99 66.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.9e-33 145.6 99 66.7
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 6.1e-31 137.9 83 74.7
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 8.8e-30 134.0 97 62.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 2.0e-29 132.9 83 72.3
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 8.8e-22 107.5 64 82.8
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.7e-21 104.8 99 55.6
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.4e-19 100.1 66 74.2
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 3.3e-16 89.0 102 40.2
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.7e-12 75.5 55 67.3


User provided reference genes

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