Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 4.8e-84 314.3 142 100.0
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.4e-69 263.8 130 86.2
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.1e-67 260.0 132 83.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.2e-65 252.3 134 79.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.5e-64 248.8 129 80.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 7.1e-64 247.3 128 81.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 7.1e-64 247.3 133 78.2
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 7.1e-64 247.3 137 77.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 7.1e-64 247.3 135 81.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 9.3e-64 246.9 137 76.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 9.3e-64 246.9 134 79.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 9.3e-64 246.9 137 76.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.2e-63 246.5 135 77.0
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 129 77.5
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.6e-63 246.1 136 77.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.1e-63 245.7 137 77.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 2.1e-63 245.7 135 80.7
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 2.1e-63 245.7 135 80.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.7e-63 245.4 134 79.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.7e-63 245.4 135 79.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.6e-63 244.6 129 83.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 6.0e-63 244.2 129 78.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 6.0e-63 244.2 129 78.3
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.9e-63 243.8 135 77.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.3e-62 242.3 129 78.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 3.0e-62 241.9 135 77.0
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 3.0e-62 241.9 135 77.0
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 76.1
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.1e-62 241.1 134 77.6
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.1e-62 241.1 135 77.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.1e-62 241.1 130 78.5
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 6.7e-62 240.7 135 78.5
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.1e-61 240.0 129 79.8
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.1e-61 240.0 136 73.5
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.5e-61 239.6 129 77.5
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.5e-61 239.6 137 75.2
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.9e-61 239.2 135 75.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.5e-61 238.8 129 76.7
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.3e-61 238.4 139 71.9
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 73.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 7.4e-61 237.3 133 75.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 9.7e-61 236.9 134 73.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.3e-60 236.5 135 75.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 2.1e-60 235.7 130 75.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.8e-60 235.3 129 74.4
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.8e-60 235.3 138 73.9
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.7e-60 235.0 135 74.8
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.8e-60 234.6 129 76.0
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 4.8e-60 234.6 139 69.1
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.8e-60 234.6 129 76.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.8e-60 234.6 134 72.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 6.3e-60 234.2 135 73.3
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.3e-60 234.2 134 73.9
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.2e-60 233.8 136 69.9
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-59 233.4 129 77.5
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 73.1
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-59 233.0 135 73.3
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.4e-59 232.3 137 73.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.1e-59 231.5 135 73.3
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 4.1e-59 231.5 119 84.0
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 4.1e-59 231.5 135 71.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 5.3e-59 231.1 135 73.3
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 6.9e-59 230.7 139 71.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-58 229.9 122 79.5
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 71.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 73.1
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 73.1
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.0e-58 229.2 130 76.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 72.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 3.4e-58 228.4 134 73.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.4e-58 228.4 129 72.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.4e-58 228.4 128 72.7
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 4.5e-58 228.0 134 70.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 5.9e-58 227.6 128 72.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 7.6e-58 227.3 134 72.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 7.6e-58 227.3 134 72.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 7.6e-58 227.3 129 74.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.0e-57 226.9 128 75.0
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 71.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 71.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 72.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 72.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 70.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.8e-57 224.9 129 71.3
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.8e-57 224.9 134 70.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.8e-57 224.9 135 74.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.8e-57 224.9 126 75.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 5.0e-57 224.6 139 69.8
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-57 224.2 134 71.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 6.5e-57 224.2 131 70.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 69.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.9e-56 222.6 129 72.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.5e-56 222.2 135 70.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.2e-56 221.9 135 70.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.2e-56 221.9 121 76.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 4.2e-56 221.5 133 69.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.2e-56 221.5 134 69.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 69.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.6e-55 219.5 129 69.8
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 69.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.1e-55 219.2 136 69.1
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.6e-55 218.4 129 71.3
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-55 218.0 121 76.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.1e-55 217.6 131 71.0
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.1e-55 217.6 130 73.1
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 131 70.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.8e-54 216.1 133 68.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.9e-54 214.9 123 73.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.9e-54 214.9 132 68.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.7e-54 214.2 129 69.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.3e-53 211.5 123 71.5
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 5.7e-53 211.1 122 74.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 5.7e-53 211.1 135 69.6
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 9.7e-53 210.3 130 67.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-52 209.5 121 74.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.6e-52 209.5 174 58.6
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.1e-51 206.8 120 72.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.4e-51 205.7 129 68.2
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.1e-51 205.3 124 70.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.1e-51 205.3 129 69.0
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.1e-51 204.9 120 70.0
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.0e-49 200.3 132 65.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.5e-49 197.2 111 74.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.5e-48 195.7 132 64.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.2e-48 195.3 135 61.5
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-47 193.4 118 67.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-46 189.5 134 61.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.9e-46 188.3 129 59.7
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 5.1e-46 188.0 96 83.3
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.3e-45 185.3 129 65.9
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.4e-45 184.9 135 60.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.7e-45 183.7 135 59.3
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 8.2e-44 180.6 100 74.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.1e-43 180.3 106 70.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.4e-42 175.3 125 63.2
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.8e-41 171.8 123 63.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-40 168.7 128 61.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.6e-39 166.4 136 60.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.3e-38 162.5 96 75.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 6.7e-38 161.0 102 66.7
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.2e-36 154.1 85 76.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 9.1e-35 150.6 75 89.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.7e-33 146.4 141 46.1
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.4e-27 126.7 69 75.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.4e-27 125.9 73 76.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-23 113.2 63 77.8
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-23 112.1 107 51.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-22 109.0 78 60.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.4e-21 105.5 79 59.5


User provided reference genes

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