Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.8e-34 146.4 73 100.0
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 6.1e-27 123.6 73 79.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 6.1e-27 123.6 73 79.5
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 8.0e-27 123.2 73 82.2
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.4e-26 122.5 73 78.1
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 3.0e-26 121.3 73 78.1
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 4.0e-26 120.9 73 79.5
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 6.8e-26 120.2 73 78.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.5e-25 119.0 75 78.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 75.3
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 77.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 8.3e-24 113.2 73 74.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 78.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 78.4
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.4e-23 112.5 73 72.6
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-23 112.1 74 78.4
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.8e-23 112.1 73 78.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 72.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 75.7
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 75.7
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 71.2
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 72.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.0e-23 110.2 74 75.7
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 7.0e-23 110.2 73 69.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 9.1e-23 109.8 73 69.9
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 9.1e-23 109.8 74 74.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.2e-22 109.4 74 75.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.0e-22 108.6 73 75.3
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 4.5e-22 107.5 74 74.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 4.5e-22 107.5 73 72.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 5.9e-22 107.1 73 71.2
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 5.9e-22 107.1 75 72.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.0e-21 106.3 75 77.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.0e-21 106.3 74 74.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.0e-21 106.3 73 74.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.3e-21 105.9 74 73.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.7e-21 105.5 73 71.2
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.7e-21 105.5 73 68.5
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-21 105.1 73 71.2
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-21 105.1 73 71.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.9e-21 104.8 75 76.0
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 6.6e-21 103.6 73 67.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.3e-20 101.3 75 72.0
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 9.5e-20 99.8 71 66.2
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 9.5e-20 99.8 74 70.3
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.2e-19 99.4 59 76.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.2e-19 99.4 59 79.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.2e-19 99.4 73 68.5
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.6e-19 99.0 73 71.2
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.6e-19 99.0 73 68.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-19 99.0 73 71.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.6e-19 99.0 75 70.7
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-19 98.6 69 65.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.6e-19 97.8 74 70.3
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 8.0e-19 96.7 66 62.1
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 8.0e-19 96.7 75 68.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-18 95.9 69 62.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.4e-18 95.9 69 66.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.4e-18 95.9 73 68.5
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.3e-18 95.1 74 67.6
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.3e-18 95.1 61 75.4
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.0e-18 94.7 74 66.2
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 4.0e-18 94.4 73 65.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 4.0e-18 94.4 81 63.0
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.2e-18 94.0 71 64.8
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 6.8e-18 93.6 64 68.8
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.8e-18 93.6 78 64.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.9e-18 93.2 78 64.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 64.4
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-17 92.8 71 66.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 78 64.1
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.0e-17 92.0 78 62.8
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.0e-17 92.0 78 62.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 78 65.4
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 78 64.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 78 64.1
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 67.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 67.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 67.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 67.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 67.2
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.4e-17 91.3 60 66.7
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 5.7e-17 90.5 64 65.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 7.5e-17 90.1 75 61.3
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 9.8e-17 89.7 71 64.8
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-16 89.4 64 65.6
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.7e-16 89.0 75 58.7
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-16 89.0 59 66.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.7e-16 89.0 78 62.8
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.2e-16 88.6 57 66.7
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.2e-16 88.6 79 62.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-16 88.2 64 67.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.8e-16 88.2 64 67.2
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.8e-16 88.2 79 64.6
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.8e-16 88.2 72 63.9
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.7e-16 87.8 71 64.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.7e-16 87.8 79 60.8
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.9e-16 87.4 79 63.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 6.3e-16 87.0 62 64.5
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.3e-16 86.7 73 53.4
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 71 56.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.8e-15 85.5 50 74.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.4e-15 85.1 62 62.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-15 85.1 64 70.3
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.4e-15 85.1 79 58.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.4e-15 85.1 79 58.2
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.4e-15 84.0 70 64.3
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.0e-15 83.6 62 61.3
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 54 72.2
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.6e-14 82.4 81 59.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.0e-14 82.0 77 59.7
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.0e-14 82.0 78 53.8
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.7e-14 81.6 80 56.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 3.5e-14 81.3 80 55.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.5e-14 81.3 45 77.8
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 7.8e-14 80.1 55 67.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 7.8e-14 80.1 45 75.6
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 7.8e-14 80.1 64 53.1
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 7.8e-14 80.1 75 52.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 7.8e-14 80.1 76 55.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-13 79.3 47 70.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-13 79.3 75 54.7
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-13 79.0 75 56.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-13 79.0 72 58.3
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.7e-13 79.0 71 57.7
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 3.9e-13 77.8 62 58.1
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.9e-13 77.8 50 68.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 5.0e-13 77.4 72 58.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 5.0e-13 77.4 68 55.9
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 6.6e-13 77.0 63 61.9
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 6.6e-13 77.0 64 54.7
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 50.7
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.5e-12 75.9 45 73.3
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.5e-12 75.9 57 66.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.9e-12 75.5 71 53.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.9e-12 75.5 64 67.2
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 5.6e-12 73.9 80 50.0
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 7.3e-12 73.6 73 53.4
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.2e-11 72.8 56 66.1
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 2.1e-11 72.0 47 72.3
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.1e-11 72.0 59 59.3
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.8e-11 71.6 53 52.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 53.3
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-11 70.9 75 52.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-11 70.9 75 52.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-11 70.9 75 52.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-11 70.9 75 52.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 4.7e-11 70.9 75 52.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.7e-11 70.9 72 52.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 3.1e-10 68.2 51 49.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.2e-08 62.0 35 80.0
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.3e-08 60.1 49 61.2
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.0e-07 57.0 43 62.8


User provided reference genes

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