Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1990.3 1041 100.0
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1380.9 1042 69.1
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1354.3 1036 70.0
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1354.3 1045 67.8
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1332.0 1008 68.2
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1331.6 1038 68.1
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1327.4 987 69.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1301.6 1044 65.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1301.6 1040 66.2
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1300.8 1043 65.8
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1300.4 1033 66.6
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1298.5 1031 66.0
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1297.3 1014 66.8
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1295.0 1058 66.4
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1286.9 976 68.0
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1285.0 929 70.5
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1284.6 1142 62.3
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1281.5 1037 66.2
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1279.6 1063 65.0
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1278.8 1031 65.6
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1277.7 1029 65.7
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1273.8 1032 66.6
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1265.8 1014 65.1
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1264.6 1044 63.8
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1248.4 1053 63.7
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1238.0 1053 63.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1233.4 1036 63.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1043 62.6
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1226.8 1049 62.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1226.8 1012 63.4
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1226.5 974 64.4
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1225.7 1060 63.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1223.4 1047 63.9
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1221.8 1048 63.5
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1218.0 1032 63.0
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1217.6 1039 61.5
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1217.2 1042 62.4
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1217.2 1042 61.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1214.9 1040 63.1
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1214.5 1032 62.1
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1213.4 1042 62.1
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1209.1 1032 63.7
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1206.8 1034 62.3
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1205.3 1041 61.9
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1201.8 1057 61.7
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1200.7 1044 62.1
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1200.7 1044 62.1
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1199.5 1061 63.0
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1198.0 1034 63.3
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1196.8 1009 61.7
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1196.4 1052 62.1
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 963 65.9
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1194.9 1008 61.4
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1191.4 1059 61.5
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1186.4 1011 62.3
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1182.5 1047 61.4
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1180.6 1042 61.3
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1180.2 1012 61.3
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1177.5 1050 60.8
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1176.4 1048 61.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 1050 60.7
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 1032 61.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1173.7 1011 61.3
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1172.1 1032 61.5
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1171.8 1048 59.2
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1168.3 1040 62.0
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1165.6 1075 59.4
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1164.1 1039 59.7
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1162.9 1003 61.2
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1155.6 1008 60.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1152.1 1033 61.2
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1144.0 1035 60.0
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1141.3 1021 59.5
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1138.3 1037 59.7
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1134.8 1042 59.4
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1130.2 1038 58.4
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1046 59.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1035 59.0
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1114.8 1053 56.7
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1095.9 1014 58.9
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.4e-311 1072.8 1028 56.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.8e-311 1072.0 1039 57.7
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 3.4e-304 1048.5 1025 54.9
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.0e-296 1022.7 738 70.3
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 1.9e-294 1016.1 1044 53.8
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 3.2e-294 1015.4 1171 51.0
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 8.4e-287 990.7 1032 55.4
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.5e-280 969.9 927 56.1
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.3e-279 966.8 745 67.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 4.9e-279 964.9 749 67.3
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 8.4e-279 964.1 745 67.0
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.9e-278 963.0 834 59.7
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 6.9e-273 944.5 1045 52.2
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 9.0e-265 917.5 769 63.2
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 8.7e-260 901.0 744 62.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.2e-240 837.4 637 65.3
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.5e-222 777.3 979 47.1
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 2.7e-221 773.1 555 71.7
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.5e-214 750.7 672 59.8
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.6e-200 704.1 559 65.1
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 9.8e-195 684.9 1023 40.2
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.0e-191 674.9 610 59.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 6.6e-183 645.6 714 50.1
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 6.8e-172 609.0 926 39.7
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 5.8e-171 605.9 886 40.6
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.4e-164 584.7 673 51.9
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.8e-164 584.3 428 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 4.8e-157 559.7 996 38.7
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.7e-94 350.1 248 72.6
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.3e-89 334.0 317 53.0
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 3.2e-84 317.8 796 34.2
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 3.5e-83 314.3 353 48.7
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 4.6e-83 313.9 394 46.7
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.4e-76 291.6 232 64.2
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-74 283.1 420 40.0
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 3.3e-73 281.2 259 56.0
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 5.6e-73 280.4 772 27.8
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.4e-68 265.8 203 66.5
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 4.7e-64 250.8 260 54.2
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 3.1e-63 248.1 300 49.3
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.8e-63 246.9 239 57.3
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 5.4e-60 237.3 824 27.9
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.7e-59 235.0 197 57.4
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.8e-46 190.7 288 45.5
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.6e-41 174.1 140 67.9
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 7.9e-35 153.7 108 71.3
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 8.5e-21 107.1 85 63.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 5.5e-20 104.4 64 71.9
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.6e-19 102.8 70 70.0
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 2.1e-19 102.4 68 73.5
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.1e-19 100.9 68 73.5
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 3.4e-14 85.1 770 20.1
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.0e-13 83.6 76 61.8
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.1e-12 80.1 52 69.2
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.6e-11 74.7 73 49.3
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 7.9e-11 73.9 339 28.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 5.1e-10 71.2 46 73.9


User provided reference genes

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