Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 3.3e-221 771.5 428 100.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 4.2e-136 488.8 442 69.2
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.2e-135 487.3 442 69.2
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 4.0e-134 482.3 439 67.7
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 3.4e-133 479.2 472 61.0
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 7.5e-133 478.0 436 68.8
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.2e-132 476.5 439 64.0
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 3.1e-131 472.6 444 67.8
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.2e-130 470.7 441 61.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.2e-127 460.7 447 62.4
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.1e-127 459.9 453 60.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.8e-127 459.5 457 60.6
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 6.8e-126 454.9 440 60.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 8.9e-126 454.5 457 60.2
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 2.0e-125 453.4 443 63.4
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.6e-125 453.0 388 71.1
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.9e-124 449.5 356 71.3
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.9e-124 448.7 452 58.8
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.4e-123 445.3 459 61.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 7.0e-123 444.9 446 60.8
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 7.0e-123 444.9 434 59.7
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 7.0e-123 444.9 436 60.6
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 9.2e-123 444.5 434 59.7
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 3.0e-121 439.5 438 63.7
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 5.0e-121 438.7 435 58.6
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 4.3e-120 435.6 433 58.9
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 7.3e-120 434.9 414 60.1
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.3e-118 429.9 417 62.4
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 5.2e-118 428.7 467 57.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 3.4e-117 426.0 448 58.9
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 5.8e-117 425.2 451 56.8
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 7.5e-117 424.9 438 62.3
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 7.5e-117 424.9 448 57.4
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 1.7e-116 423.7 425 59.1
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.7e-116 423.7 433 58.2
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 2.9e-116 422.9 357 66.1
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.9e-116 422.9 454 57.3
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 3.7e-116 422.5 445 60.4
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.4e-115 420.6 463 57.2
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 2.4e-115 419.9 401 60.8
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.2e-115 419.5 463 59.8
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.2e-115 419.5 422 58.5
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.1e-114 416.8 429 60.4
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 2.7e-114 416.4 442 57.0
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 2.7e-114 416.4 435 58.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 4.6e-114 415.6 445 55.7
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.0e-113 414.5 367 63.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.0e-113 414.5 455 56.7
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.0e-113 414.5 445 56.2
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 1.7e-113 413.7 358 66.8
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 3.0e-113 412.9 428 57.9
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 3.9e-113 412.5 441 57.4
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 6.6e-113 411.8 433 58.0
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.1e-112 411.0 445 55.7
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 2.5e-112 409.8 406 59.4
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 3.3e-112 409.5 470 55.7
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 5.6e-112 408.7 461 58.4
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 9.5e-112 407.9 422 57.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.2e-109 401.0 457 57.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.5e-109 400.6 460 56.1
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.0e-109 400.2 455 57.8
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.6e-109 399.8 361 61.5
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 4.4e-109 399.1 446 57.6
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.8e-109 398.7 453 57.6
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 7.5e-109 398.3 471 56.9
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 7.5e-109 398.3 471 56.9
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 9.9e-109 397.9 396 59.1
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.4e-107 394.0 450 54.2
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 4.1e-107 392.5 461 57.0
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 5.4e-107 392.1 308 73.4
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 3.5e-106 389.4 420 56.9
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 5.1e-105 385.6 462 56.5
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 8.6e-105 384.8 505 51.5
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.1e-104 384.4 445 57.8
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.8e-102 377.1 470 56.6
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 2.4e-102 376.7 445 52.6
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 6.8e-102 375.2 418 56.5
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.9e-100 369.8 465 52.3
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 8.4e-100 368.2 305 71.8
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.4e-99 367.5 457 56.9
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 5.4e-99 365.5 457 57.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.0e-97 361.3 365 58.4
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.7e-97 360.5 464 55.4
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 3.9e-97 359.4 467 51.6
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 9.6e-96 354.8 433 56.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.8e-95 353.2 456 54.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.8e-94 350.5 443 53.7
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 5.3e-94 349.0 382 60.2
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 9.0e-94 348.2 433 52.4
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 5.8e-93 345.5 363 56.5
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.4e-91 340.9 381 53.8
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.3e-89 334.3 442 50.0
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 8.7e-89 331.6 248 71.0
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.5e-88 330.1 333 62.5
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 7.3e-88 328.6 248 69.8
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 9.6e-88 328.2 410 51.5
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.6e-87 327.4 420 50.0
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 4.8e-87 325.9 319 64.9
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.8e-87 325.9 407 52.1
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.8e-86 323.9 407 51.8
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 4.6e-82 309.3 349 52.7
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 7.9e-82 308.5 381 53.0
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 3.0e-81 306.6 431 46.6
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 6.7e-81 305.4 289 60.6
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.8e-79 299.3 354 54.8
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 6.2e-79 298.9 623 37.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 2.0e-77 293.9 287 63.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 8.4e-76 288.5 431 48.3
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 5.5e-75 285.8 481 43.9
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.0e-74 282.3 500 39.8
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.0e-74 282.3 500 39.8
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.3e-72 276.6 453 46.1
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 3.7e-71 273.1 212 68.4
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.4e-70 270.4 295 52.5
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 2.6e-69 266.9 316 57.0
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.5e-67 260.4 343 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.5e-64 250.4 388 49.2
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.7e-64 248.4 201 63.7
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 7.7e-61 238.8 365 45.5
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.0e-56 224.2 343 51.9
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 2.2e-55 220.7 285 48.1
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 9.1e-54 215.3 235 53.2
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.5e-52 209.1 119 88.2
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 4.7e-50 203.0 429 38.9
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 5.3e-46 189.5 309 50.2
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 4.2e-43 179.9 102 83.3
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 6.7e-41 172.6 327 47.7
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.0e-37 161.0 327 42.2
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.7e-36 157.9 169 44.4
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 1.4e-30 138.3 396 36.4
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 5.4e-30 136.3 242 43.4
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.0e-28 132.1 148 42.6
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.7e-28 131.3 67 94.0
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.3e-23 112.8 74 75.7
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.6e-21 108.2 64 79.7
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.3e-20 104.4 132 50.8
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.0e-20 103.2 132 49.2
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 6.6e-20 102.8 140 46.4
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.2e-18 98.6 189 41.3
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 6.1e-18 96.3 66 72.7
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 3.2e-14 84.0 137 49.6
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.6e-13 81.6 69 56.5
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 4.6e-13 80.1 47 76.6
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.3e-11 73.6 65 49.2
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.8e-10 70.9 110 42.7
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.8e-09 68.2 117 47.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 2.0e-08 64.7 52 65.4
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 4.4e-08 63.5 138 25.4


User provided reference genes

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