Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 6.0e-200 700.7 361 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 5.7e-158 561.2 360 80.0
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.8e-156 556.2 362 77.1
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 5.3e-156 554.7 360 78.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.5e-155 553.1 362 77.1
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.8e-154 548.5 362 77.3
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.5e-153 545.8 359 77.2
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.2e-152 543.5 359 76.0
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.0e-151 540.4 360 74.7
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.0e-151 540.4 360 76.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.4e-151 540.0 360 74.7
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 6.7e-151 537.7 333 82.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-150 537.0 358 76.0
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.3e-150 535.4 360 76.7
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.4e-150 535.0 332 82.2
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.3e-149 533.5 360 74.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.8e-149 532.3 360 75.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.7e-149 531.9 360 73.6
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.7e-149 531.9 358 75.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.7e-149 531.9 360 74.2
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.4e-148 530.0 360 74.2
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.4e-148 529.3 374 72.7
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.1e-148 528.9 358 75.7
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 3.1e-148 528.9 360 74.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 9.1e-148 527.3 360 74.2
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.6e-147 526.6 360 73.6
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.6e-147 526.6 360 75.3
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 7.7e-147 524.2 361 72.9
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.9e-146 522.3 360 74.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 5.0e-146 521.5 360 73.1
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.1e-145 520.4 360 72.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.1e-145 520.4 360 72.8
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.1e-145 520.4 360 72.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 7.2e-145 517.7 358 73.2
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 9.4e-145 517.3 360 71.1
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 4.7e-144 515.0 381 71.7
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.8e-143 513.1 356 73.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 4.0e-143 511.9 358 74.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.7e-143 511.1 346 74.9
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 6.7e-143 511.1 360 71.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 8.8e-143 510.8 369 71.0
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.0e-142 509.6 382 69.4
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.3e-142 508.8 356 72.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.7e-142 508.1 360 71.9
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.7e-142 508.1 356 72.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.8e-141 505.8 331 76.1
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.8e-141 505.8 360 71.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 3.7e-141 505.4 360 73.6
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.4e-140 503.4 364 70.3
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.4e-140 503.4 356 69.9
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.8e-140 503.1 356 70.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.1e-140 502.3 359 71.0
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.1e-140 501.9 357 72.3
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 9.1e-140 500.7 368 70.4
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 9.1e-140 500.7 359 71.9
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.6e-139 500.0 362 67.7
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.6e-139 500.0 363 71.9
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 4.5e-139 498.4 361 70.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.9e-139 498.0 357 71.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.0e-138 497.3 361 71.2
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.0e-138 497.3 362 72.1
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.2e-138 496.1 360 71.9
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.2e-138 496.1 360 71.9
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 6.5e-138 494.6 364 68.4
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.5e-137 493.4 413 63.9
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 2.1e-136 489.6 363 69.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 8.0e-136 487.6 362 71.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.4e-135 486.9 359 71.6
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.5e-134 483.4 366 68.9
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.5e-134 483.4 333 72.7
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.0e-134 483.0 436 62.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.6e-131 473.4 364 66.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.5e-129 466.8 282 80.1
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.2e-128 463.8 330 69.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.7e-125 453.4 354 63.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 7.0e-124 448.0 356 66.9
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.0e-122 444.1 356 64.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.0e-122 441.8 359 64.1
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 6.8e-119 431.4 301 69.4
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 8.9e-119 431.0 264 78.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.7e-117 426.8 362 65.2
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 7.0e-116 421.4 340 66.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.0e-114 417.5 357 62.7
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.1e-113 414.1 355 63.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.5e-113 412.9 262 80.9
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 2.8e-112 409.5 337 63.5
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.5e-110 403.7 263 80.2
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.6e-110 402.9 264 80.3
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.1e-108 395.6 271 74.9
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.5e-107 392.5 368 58.2
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 7.8e-107 391.3 263 78.7
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.5e-105 386.3 262 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 6.2e-104 381.7 339 58.4
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.1e-103 379.4 360 58.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.2e-103 378.6 260 75.8
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 8.9e-103 377.9 332 58.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.7e-101 373.6 301 62.5
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 6.4e-101 371.7 262 72.9
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.9e-100 370.2 258 72.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.2e-96 355.1 273 64.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 4.4e-94 349.0 252 70.6
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.5e-91 339.3 386 48.4
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.5e-89 334.0 207 82.6
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.6e-86 323.2 311 55.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.9e-84 317.0 202 80.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.9e-77 292.4 352 47.2
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.3e-72 277.7 346 46.5
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 9.6e-65 251.5 186 66.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 8.7e-58 228.4 450 36.2
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-57 227.3 219 55.3
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 6.7e-50 202.2 144 74.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 8.7e-50 201.8 217 50.7
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.8e-48 196.1 385 35.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.2e-40 168.7 146 63.0
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.7e-35 153.7 159 54.1
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 6.1e-35 152.5 320 30.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.4e-33 146.4 146 55.5
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-29 135.2 118 56.8
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.8e-29 133.3 107 66.4
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-27 128.3 138 52.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.7e-27 126.3 96 61.5
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.8e-23 114.4 75 72.0
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.3e-23 112.8 77 75.3
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.2e-22 111.7 81 66.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.7e-22 110.5 73 71.2
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 4.7e-19 99.8 215 31.2
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 2.3e-18 97.4 89 62.9
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.8e-07 61.2 104 35.6
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 7.0e-07 59.3 30 90.0
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 9.2e-07 58.9 103 33.0
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 2.0e-06 57.8 148 29.7
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 4.5e-06 56.6 188 27.7
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 5.9e-06 56.2 88 37.5
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 7.8e-06 55.8 103 34.0
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 7.8e-06 55.8 138 31.2


User provided reference genes

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