Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.0e-157 559.3 282 100.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.7e-82 310.5 287 63.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.2e-79 300.1 280 60.0
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-78 297.7 290 61.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.9e-78 297.0 285 60.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.5e-78 296.6 287 61.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.0e-76 291.2 286 60.5
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 6.7e-76 288.5 290 59.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.1e-75 287.7 286 59.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.5e-75 287.3 286 57.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.5e-75 287.3 287 59.6
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.7e-75 285.4 289 59.2
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.3e-74 284.3 304 55.9
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.7e-74 283.9 282 59.2
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.7e-74 282.7 281 56.6
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.1e-73 279.3 284 56.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.0e-73 278.5 284 59.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.6e-72 277.3 296 57.4
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-72 276.6 283 59.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.5e-72 276.2 284 57.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.7e-72 275.0 284 57.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.8e-71 272.7 283 58.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.2e-70 269.6 285 57.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 7.2e-70 268.5 292 57.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-69 265.0 325 52.6
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-69 265.0 325 52.6
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.0e-67 260.4 279 55.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.3e-67 259.6 289 55.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 3.3e-67 259.6 320 50.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.7e-67 258.8 293 57.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.1e-65 254.6 289 54.7
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.1e-65 252.7 299 51.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.3e-65 252.3 282 53.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.1e-65 251.5 284 54.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.2e-64 251.1 285 55.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.6e-64 250.8 288 55.2
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.0e-64 250.4 285 54.7
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-64 250.4 285 54.7
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.7e-64 250.0 286 52.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.7e-64 250.0 305 51.8
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.7e-64 250.0 294 53.1
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.5e-64 249.2 288 53.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.7e-63 247.3 285 54.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.7e-63 247.3 286 52.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.2e-63 246.9 284 52.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.9e-63 246.5 291 52.6
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.8e-63 246.1 287 53.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.5e-63 245.0 300 52.3
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.9e-62 243.8 288 52.1
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.9e-62 243.8 288 52.1
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.9e-62 243.8 288 53.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.2e-62 243.0 287 53.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 4.2e-62 242.7 289 51.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.2e-62 242.7 292 52.7
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.5e-62 242.3 286 52.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.5e-62 242.3 299 49.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.2e-61 241.1 290 53.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.2e-61 241.1 286 53.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-61 240.4 295 50.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 6.1e-61 238.8 292 52.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 8.0e-61 238.4 292 51.7
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 8.0e-61 238.4 289 53.3
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 8.0e-61 238.4 304 51.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.0e-60 238.0 288 53.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.4e-60 237.7 286 53.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.4e-60 237.7 305 51.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.4e-60 237.7 287 50.9
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.3e-60 236.9 285 52.3
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.0e-60 236.5 283 49.5
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.0e-60 236.5 288 53.1
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.0e-60 236.5 289 54.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.0e-60 236.5 295 51.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 4.0e-60 236.1 296 50.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 4.0e-60 236.1 285 52.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.8e-60 235.3 281 50.9
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 8.8e-60 235.0 291 50.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.5e-59 234.2 285 51.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.5e-59 234.2 291 51.5
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.5e-59 234.2 288 53.1
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.5e-59 234.2 285 50.9
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-59 233.8 236 58.5
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.0e-59 233.8 286 50.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.6e-59 233.4 294 49.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.4e-59 233.0 287 51.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-59 233.0 332 45.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.7e-58 230.7 277 53.1
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.2e-58 230.3 249 56.6
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.8e-58 229.9 282 47.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.7e-58 229.6 240 56.7
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.7e-58 229.6 299 49.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 6.3e-58 228.8 290 49.3
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 8.3e-58 228.4 296 50.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.3e-58 228.4 298 49.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.4e-57 227.6 283 51.6
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.1e-57 226.1 282 51.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 7.0e-57 225.3 289 50.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.2e-56 224.6 307 48.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.0e-56 223.8 282 50.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 4.5e-56 222.6 295 51.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 7.7e-56 221.9 215 58.6
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-55 221.1 287 51.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.3e-55 220.3 311 47.6
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.9e-55 219.9 273 51.3
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.0e-55 219.2 289 50.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 8.6e-55 218.4 283 50.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-54 218.0 217 58.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.5e-54 217.6 285 50.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.2e-54 216.1 289 50.5
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 4.2e-54 216.1 288 50.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 4.2e-54 216.1 259 53.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.2e-54 215.3 288 50.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.1e-53 213.8 286 49.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 3.6e-53 213.0 283 50.2
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.6e-53 213.0 290 49.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.6e-53 213.0 288 51.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 6.1e-53 212.2 305 46.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 8.0e-53 211.8 290 49.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 8.0e-53 211.8 278 46.8
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 3.0e-52 209.9 294 49.3
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.0e-52 209.9 288 49.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.0e-52 209.9 287 49.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 4.0e-52 209.5 287 49.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.2e-52 209.1 288 50.7
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.6e-51 206.8 171 64.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.4e-51 206.1 281 47.7
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 5.7e-51 205.7 290 48.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.7e-51 205.7 287 48.1
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 9.8e-51 204.9 287 46.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.0e-49 198.7 160 64.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.9e-48 195.7 263 50.2
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.3e-46 189.9 286 47.6
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 9.5e-46 188.3 165 58.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.6e-45 187.6 288 44.4
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.9e-44 181.8 241 49.8
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.2e-43 181.4 127 70.9
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.0e-43 180.6 202 54.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.4e-43 179.5 289 42.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 9.8e-43 178.3 273 42.1
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.4e-41 172.6 159 59.7
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 7.3e-38 162.2 189 52.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-37 160.6 173 53.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.6e-37 159.8 166 54.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-35 154.8 159 55.3
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.7e-34 151.0 277 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.4e-33 147.1 121 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.4e-33 147.1 121 58.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.6e-30 136.0 133 54.1
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.1e-29 134.0 236 43.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 4.0e-28 129.8 294 36.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.9e-28 128.6 214 41.1
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 9.2e-25 118.6 132 42.4
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.3e-23 114.0 79 69.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.0e-16 89.4 57 68.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.8e-13 80.5 178 38.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.0e-12 76.6 110 50.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 5.3e-12 76.3 91 50.5
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 5.3e-12 76.3 103 44.7
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-11 75.1 157 42.0
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 2.1e-08 64.3 45 75.6
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.6e-08 63.2 106 49.1
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-07 61.6 50 56.0
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.3e-07 61.6 149 38.9
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.1e-06 58.5 106 42.5


User provided reference genes

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