Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 0.0e+00 1432.2 736 100.0
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.5e-80 305.1 792 34.3
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.0e-80 304.7 795 34.0
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.4e-75 288.5 740 34.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 3.2e-75 287.3 794 35.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 3.6e-74 283.9 731 33.9
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.0e-73 282.3 798 34.0
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-73 282.0 140 100.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 7.4e-72 276.2 792 34.1
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.4e-70 271.9 791 34.1
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 7.7e-69 266.2 661 34.3
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 2.2e-68 264.6 786 32.4
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.4e-65 255.4 737 31.3
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.4e-62 244.6 790 32.2
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.7e-61 241.1 738 32.8
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 4.5e-61 240.4 773 31.2
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 5.9e-61 240.0 785 31.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 5.9e-61 240.0 775 31.7
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.9e-60 237.7 784 32.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.0e-60 236.9 784 32.1
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.3e-55 222.2 790 30.6
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.7e-55 221.9 784 31.6
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 2.2e-55 221.5 749 31.5
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 7.7e-53 213.0 793 30.8
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.8e-49 201.8 794 28.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-47 194.9 735 29.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 4.5e-45 187.2 783 28.5
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.4e-40 171.0 733 27.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.9e-39 167.2 367 37.3
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.4e-38 165.6 327 39.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 9.2e-38 162.9 664 28.5
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 5.9e-37 160.2 695 27.9
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 7.8e-37 159.8 664 28.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-36 159.5 580 30.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.3e-36 159.1 344 35.5
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-36 159.1 637 28.9
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.3e-36 158.3 723 27.7
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 5.0e-36 157.1 705 27.4
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.6e-36 156.8 360 35.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 1.8e-33 148.7 345 34.8
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 4.0e-33 147.5 722 26.3
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.0e-32 145.2 805 26.5
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 8.3e-31 139.8 797 27.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 5.4e-30 137.1 437 31.1
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 7.8e-29 133.3 620 26.5
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.7e-28 132.1 345 31.6
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.9e-28 131.0 402 29.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 6.6e-28 130.2 325 31.7
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 4.3e-27 127.5 442 32.8
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 5.6e-27 127.1 508 30.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.5e-27 126.3 357 33.3
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.6e-26 125.6 272 39.3
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 6.2e-26 123.6 319 33.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.4e-25 122.5 372 31.7
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.1e-25 121.3 309 31.1
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.0e-25 120.9 347 32.6
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.2e-25 120.6 421 27.8
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.6e-24 118.2 325 31.4
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.4e-24 117.9 345 33.3
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 7.5e-24 116.7 248 40.3
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 6.4e-23 113.6 343 33.5
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.4e-22 111.7 314 32.5
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.4e-22 111.7 244 35.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 3.5e-21 107.8 297 32.3
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.6e-21 107.5 585 28.4
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 6.0e-21 107.1 401 28.9
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 7.8e-21 106.7 323 32.2
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.3e-20 105.9 334 31.4
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.0e-20 104.8 309 32.7
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.5e-19 102.4 339 32.7
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 4.3e-19 100.9 339 33.0
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-18 98.6 482 25.9
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.1e-17 94.7 311 31.2
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 5.2e-17 94.0 428 29.9
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 5.2e-17 94.0 317 30.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 6.8e-17 93.6 482 25.7
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.0e-16 92.0 328 31.4
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.6e-16 91.7 257 31.9
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.6e-16 91.7 296 30.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 4.4e-16 90.9 296 30.4
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 5.8e-16 90.5 305 32.8
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.7e-15 89.0 374 32.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.7e-15 89.0 359 32.9
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.9e-15 87.4 562 23.5
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.4e-14 85.9 244 32.4
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.2e-14 84.7 320 29.1
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 5.4e-14 84.0 403 30.5
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.6e-13 82.4 261 30.7
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 2.7e-13 81.6 599 24.5
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 6.0e-13 80.5 382 30.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.8e-13 80.1 372 27.4
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.7e-12 79.0 368 26.6
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.7e-12 79.0 368 26.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.9e-12 77.8 355 26.5
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 3.9e-12 77.8 334 28.1
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 6.6e-12 77.0 355 26.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 2.8e-10 71.6 293 30.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-09 69.3 348 26.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 3.1e-09 68.2 275 26.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.1e-09 68.2 380 25.0
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.2e-09 67.4 348 27.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 9.0e-09 66.6 209 28.7
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.7e-07 62.4 303 28.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.4e-06 59.3 322 26.7
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 9.3e-06 56.6 117 37.6


User provided reference genes

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