Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 5.6e-128 461.1 255 100.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.8e-34 149.8 279 42.3
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.6e-34 149.4 257 44.4
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 6.2e-34 148.7 267 41.6
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.1e-34 148.3 270 46.3
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.8e-33 147.1 266 42.1
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.2e-31 140.2 275 40.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.2e-30 136.3 276 42.8
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.1e-30 135.2 273 40.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 9.3e-30 134.8 235 44.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-29 134.4 256 37.9
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.6e-29 134.0 265 39.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.6e-29 134.0 262 40.1
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.1e-29 133.7 231 43.3
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.7e-29 133.3 236 43.6
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.7e-29 133.3 244 45.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.5e-29 132.9 233 42.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.6e-29 132.5 258 41.5
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.6e-29 132.5 278 37.8
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.0e-28 131.3 268 39.2
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.0e-28 131.3 243 43.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.3e-28 131.0 256 37.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 3.0e-28 129.8 265 41.5
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.1e-28 129.0 242 42.6
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 8.7e-28 128.3 273 37.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.3e-27 126.3 273 40.3
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 5.6e-27 125.6 257 39.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 7.3e-27 125.2 245 40.4
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 9.6e-27 124.8 279 37.3
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.3e-26 124.4 247 40.1
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-26 124.0 243 42.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.1e-26 123.6 246 38.6
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.8e-25 120.6 265 36.6
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.8e-25 120.6 233 38.6
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 4.0e-25 119.4 243 37.9
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.5e-24 117.5 258 40.3
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.4e-24 116.3 314 34.1
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 7.6e-24 115.2 251 40.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.6e-24 115.2 250 37.2
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 9.9e-24 114.8 233 37.8
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.7e-23 114.0 281 34.2
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-23 114.0 241 38.6
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 8.4e-23 111.7 238 38.7
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.9e-22 110.5 273 39.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.4e-22 110.2 277 32.9
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 2.4e-22 110.2 298 32.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 4.2e-22 109.4 276 39.1
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 4.2e-22 109.4 289 36.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 5.4e-22 109.0 259 35.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.2e-21 107.8 256 37.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.6e-21 107.5 203 40.4
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 2.1e-21 107.1 98 60.2
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-21 106.7 197 38.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.6e-21 105.9 238 40.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 6.0e-21 105.5 260 31.5
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 6.0e-21 105.5 279 32.3
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.3e-20 103.6 138 50.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.0e-20 103.2 262 36.6
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.9e-20 102.8 252 36.5
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 5.1e-20 102.4 92 63.0
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 5.1e-20 102.4 84 71.4
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 8.7e-20 101.7 272 34.9
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.9e-19 100.5 290 31.4
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.5e-19 100.1 259 35.1
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.3e-19 99.8 244 36.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 3.3e-19 99.8 247 34.0
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.3e-19 99.8 236 35.2
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 9.6e-19 98.2 231 37.7
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.3e-18 97.8 119 53.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.6e-18 97.4 185 37.8
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.1e-18 97.1 71 70.4
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.7e-18 96.3 86 61.6
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.4e-17 94.4 91 60.4
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 3.1e-17 93.2 259 34.0
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 4.0e-17 92.8 137 44.5
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 5.3e-17 92.4 137 43.1
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 2.0e-16 90.5 66 71.2
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.0e-16 90.5 119 49.6
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.4e-16 89.7 241 36.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.4e-16 89.7 170 43.5
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 5.8e-16 89.0 150 44.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 5.8e-16 89.0 91 58.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.0e-15 88.2 250 32.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 2.2e-15 87.0 264 33.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 3.8e-15 86.3 140 45.0
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 1.9e-14 84.0 258 32.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.9e-14 84.0 235 36.2
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.9e-14 84.0 76 67.1
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.9e-14 84.0 138 42.0
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 3.2e-14 83.2 116 47.4
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 3.2e-14 83.2 76 61.8
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 4.2e-14 82.8 153 39.9
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 4.2e-14 82.8 153 39.9
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.2e-14 82.8 303 30.4
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 5.5e-14 82.4 161 41.6
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 5.5e-14 82.4 83 57.8
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.5e-14 82.4 234 34.2
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 7.1e-14 82.0 308 28.2
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 7.1e-14 82.0 91 53.8
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 9.3e-14 81.6 246 34.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.3e-14 81.6 121 44.6
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.2e-13 81.3 73 61.6
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.2e-13 81.3 73 61.6
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.1e-13 80.5 235 34.9
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.1e-13 80.5 82 58.5
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.7e-13 80.1 190 34.2
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 3.5e-13 79.7 139 40.3
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.5e-13 79.7 173 38.2
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 4.6e-13 79.3 149 43.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 4.6e-13 79.3 260 34.2
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 6.0e-13 79.0 58 65.5
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.0e-12 78.2 234 33.3
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.8e-12 77.4 181 37.0
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.3e-12 77.0 245 34.7
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 3.9e-12 76.3 72 59.7
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 8.7e-12 75.1 64 64.1
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.1e-11 74.7 229 31.0
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.5e-11 74.3 217 31.8
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 2.5e-11 73.6 64 64.1
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 3.3e-11 73.2 64 64.1
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 3.3e-11 73.2 71 54.9
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 4.3e-11 72.8 94 54.3
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 4.3e-11 72.8 224 33.9
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 5.7e-11 72.4 161 36.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 7.4e-11 72.0 173 35.3
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 9.6e-11 71.6 218 31.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.8e-10 70.1 235 29.4
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 4.8e-10 69.3 202 33.7
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.4e-09 67.8 239 31.8
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.1e-09 66.2 51 68.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 9.0e-09 65.1 208 33.2
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 4.5e-08 62.8 226 30.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 5.8e-08 62.4 62 54.8
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 7.6e-08 62.0 76 51.3
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.7e-07 60.8 62 53.2
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 2.5e-06 57.0 230 28.7


User provided reference genes

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