Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.7e-120 434.9 219 100.0
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 6.9e-74 281.2 226 63.3
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.5e-71 271.6 223 60.1
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.8e-69 266.5 225 59.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 6.7e-69 264.6 225 60.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.5e-68 262.7 227 59.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.6e-68 261.5 200 61.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.8e-67 259.2 227 56.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.8e-67 258.5 220 62.3
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 6.2e-67 258.1 196 64.8
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.1e-66 257.3 224 58.0
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.1e-66 257.3 222 59.5
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.8e-66 256.5 188 64.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.8e-66 256.5 227 55.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.4e-66 256.1 208 61.5
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.4e-66 256.1 223 58.3
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.1e-66 255.8 228 57.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.0e-66 255.4 194 61.3
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 6.9e-66 254.6 225 60.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.2e-65 253.8 254 53.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.2e-65 253.8 207 60.9
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.0e-65 253.1 226 58.0
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.0e-64 250.8 224 58.5
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.3e-64 250.4 223 56.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.9e-64 248.4 221 57.0
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 6.5e-64 248.1 228 55.3
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 3.2e-63 245.7 220 56.8
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 3.2e-63 245.7 208 58.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 3.2e-63 245.7 216 57.9
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.2e-63 245.4 213 57.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.2e-63 245.4 190 63.7
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 5.5e-63 245.0 212 58.0
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.3e-63 244.2 208 58.7
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 9.3e-63 244.2 223 54.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.2e-62 243.8 227 55.1
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.2e-62 243.8 190 62.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.5e-62 242.3 191 60.7
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 6.0e-62 241.5 202 58.4
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 7.9e-62 241.1 222 57.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.3e-61 240.4 208 58.2
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.8e-61 240.0 225 61.3
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.9e-61 238.8 231 53.2
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.9e-61 238.8 227 55.5
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.1e-61 238.4 191 60.2
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 5.1e-61 238.4 229 52.8
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.1e-61 238.4 218 56.9
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 6.7e-61 238.0 218 56.9
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.1e-60 237.3 208 63.0
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.5e-60 236.9 213 56.8
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.5e-60 236.9 237 54.0
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.9e-60 236.5 216 55.1
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.9e-60 236.5 192 57.8
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.5e-60 236.1 194 57.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.5e-60 236.1 213 56.3
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 5.7e-60 235.0 213 58.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.7e-60 235.0 222 55.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 7.4e-60 234.6 210 54.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 9.6e-60 234.2 215 55.3
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-59 233.8 235 52.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.3e-59 233.8 218 53.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.6e-59 233.4 193 58.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.8e-59 232.6 207 55.6
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.8e-59 232.6 231 52.8
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.8e-59 232.6 266 46.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.7e-59 232.3 233 52.4
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 3.7e-59 232.3 228 51.8
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 6.3e-59 231.5 215 54.9
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 6.3e-59 231.5 215 55.3
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 8.2e-59 231.1 213 56.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 8.2e-59 231.1 235 51.9
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 4.1e-58 228.8 230 55.2
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 5.3e-58 228.4 240 51.2
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-57 227.3 214 55.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.5e-57 226.9 197 55.3
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 2.6e-57 226.1 219 53.0
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.6e-57 226.1 203 54.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.6e-57 226.1 226 50.9
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.4e-57 225.7 209 56.9
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-56 223.8 214 54.7
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-56 223.4 214 54.7
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.7e-56 223.4 213 53.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-56 223.0 225 52.0
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.8e-56 222.2 213 53.1
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 5.0e-56 221.9 226 51.3
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 6.5e-56 221.5 227 52.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 6.5e-56 221.5 227 53.7
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.1e-55 220.7 226 51.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.4e-55 220.3 208 54.3
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.9e-55 219.9 194 55.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.2e-55 219.2 208 52.9
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.2e-55 219.2 208 53.4
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 3.2e-55 219.2 230 57.0
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 4.2e-55 218.8 191 57.1
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 7.2e-55 218.0 204 54.4
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.7e-54 216.1 227 52.4
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-54 216.1 227 52.4
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-54 216.1 227 52.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 6.1e-54 214.9 230 53.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.9e-54 214.5 197 52.8
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.0e-53 214.2 179 59.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.8e-53 213.4 161 61.5
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.8e-53 213.4 225 48.0
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.3e-53 213.0 197 51.3
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.1e-53 211.8 200 53.0
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.1e-53 211.8 225 51.1
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 6.7e-53 211.5 227 51.5
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.5e-52 210.3 207 51.7
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.5e-52 209.5 230 53.5
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.5e-52 209.5 227 53.3
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.4e-52 208.0 207 54.1
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 9.7e-52 207.6 198 52.5
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.3e-51 207.2 209 50.7
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 2.2e-51 206.5 233 47.2
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.7e-51 205.7 199 55.3
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.7e-51 205.7 231 47.6
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.7e-51 205.7 216 48.6
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.7e-51 205.7 207 51.7
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.3e-51 204.9 192 51.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.9e-50 201.4 196 51.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 9.1e-50 201.1 206 51.9
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 9.1e-50 201.1 190 51.6
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.0e-49 199.9 214 56.5
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 4.5e-49 198.7 208 49.5
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 4.5e-49 198.7 193 52.3
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 5.9e-49 198.4 200 52.5
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 7.7e-49 198.0 210 50.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 3.8e-48 195.7 196 51.5
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 6.5e-48 194.9 218 44.5
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-47 193.4 199 51.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-47 193.0 228 47.4
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.5e-47 193.0 228 46.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 9.4e-47 191.0 199 50.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.2e-46 190.7 133 65.4
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.6e-46 188.7 213 47.9
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-45 187.2 195 48.7
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 2.3e-45 186.4 255 41.2
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.0e-45 186.0 206 44.2
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.6e-44 183.0 199 48.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 9.7e-44 181.0 189 43.9
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 8.2e-43 177.9 213 47.9
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.1e-42 177.6 191 43.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-42 177.2 213 47.9
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.9e-42 174.9 212 43.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 3.4e-41 172.6 192 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.5e-41 172.2 193 45.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.9e-40 169.5 139 59.0
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.0e-40 168.7 200 44.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.0e-40 168.7 200 44.5
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 3.2e-39 166.0 141 64.5
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.4e-39 164.5 168 48.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.8e-35 152.9 187 45.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.7e-35 152.5 185 44.9
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 7.0e-34 148.3 226 39.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 5.2e-29 132.1 196 39.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.2e-29 132.1 140 50.7
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.8e-29 131.3 158 44.3
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-28 130.6 197 40.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.0e-25 120.2 158 39.2
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.3e-24 117.5 126 48.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.8e-24 115.9 143 41.3
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.5e-24 115.2 143 44.1
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.0e-21 107.8 181 37.6
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.2e-17 94.4 72 65.3
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 5.9e-17 92.0 53 75.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.8e-16 89.4 103 43.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.0e-13 81.3 52 69.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.0e-13 79.3 68 55.9
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.9e-11 72.4 159 32.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.8e-10 70.5 111 36.0
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 2.7e-09 66.6 111 36.0
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.9e-09 65.5 65 53.8
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.7e-08 63.9 71 43.7
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 8.6e-08 61.6 58 48.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.6e-07 58.9 73 43.8
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 2.1e-06 57.0 58 46.6


User provided reference genes

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