Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.5e-78 296.2 158 100.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 6.1e-56 221.1 158 75.3
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.0e-55 220.3 158 71.5
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 8.8e-55 217.2 158 70.9
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.1e-52 210.3 159 73.0
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 9.1e-52 207.2 158 71.5
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 3.5e-51 205.3 158 69.6
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.7e-50 203.0 162 66.7
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.2e-50 202.6 160 65.0
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 5.0e-50 201.4 164 65.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 5.0e-50 201.4 164 65.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.5e-50 201.1 160 66.2
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-49 199.9 162 66.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.5e-49 199.1 161 63.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.6e-48 196.4 158 60.1
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.1e-48 196.1 162 65.4
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.7e-48 195.7 161 64.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.7e-48 195.7 158 69.0
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 4.7e-48 194.9 158 63.9
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.7e-48 194.9 161 67.7
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 6.1e-48 194.5 152 64.5
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 8.0e-48 194.1 161 65.2
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.4e-47 193.4 160 68.8
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.8e-47 193.0 159 64.8
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.3e-47 192.6 145 64.8
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-47 192.6 149 65.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.3e-47 192.6 160 61.2
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.0e-47 192.2 163 62.6
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 3.0e-47 192.2 160 62.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.0e-47 192.2 156 62.2
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 4.0e-47 191.8 159 62.9
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 4.0e-47 191.8 159 65.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 4.0e-47 191.8 158 67.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.2e-47 191.4 160 63.1
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 6.8e-47 191.0 160 62.5
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.5e-46 189.9 162 64.8
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.3e-45 186.8 160 62.5
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.3e-45 186.8 160 61.2
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.7e-45 186.4 158 62.0
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.7e-45 186.4 158 61.4
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 4.8e-45 184.9 161 64.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 6.3e-45 184.5 163 60.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 6.3e-45 184.5 141 66.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 8.3e-45 184.1 140 63.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 8.3e-45 184.1 156 60.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-44 183.3 148 68.2
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-44 183.3 148 68.2
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-44 183.3 148 68.2
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 2.4e-44 182.6 161 62.1
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.4e-44 182.6 140 64.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.1e-44 182.2 157 65.6
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 4.1e-44 181.8 160 64.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 7.0e-44 181.0 147 63.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.6e-43 179.9 127 66.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.6e-43 179.9 157 66.9
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.5e-43 178.7 143 69.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.5e-43 178.3 141 69.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 4.5e-43 178.3 157 64.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 4.5e-43 178.3 157 58.0
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.0e-42 177.2 158 64.6
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.3e-42 176.8 148 68.2
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.7e-42 176.4 144 68.1
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.9e-42 175.6 140 66.4
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 2.9e-42 175.6 158 60.8
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.9e-42 175.6 137 66.4
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.8e-42 175.3 141 66.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.0e-42 174.9 137 67.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 6.5e-42 174.5 160 64.4
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.5e-42 174.1 147 69.4
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 8.5e-42 174.1 159 59.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.1e-41 173.7 158 54.4
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.5e-41 173.3 147 68.7
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.5e-41 173.3 158 59.5
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.9e-41 172.9 162 61.7
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.9e-41 172.9 145 59.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 4.2e-41 171.8 139 61.9
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.2e-41 171.8 158 59.5
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.2e-41 171.0 161 55.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.7e-40 169.1 171 59.1
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.7e-40 169.1 158 57.6
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.1e-40 167.9 132 62.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.0e-40 167.5 162 63.0
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.0e-39 167.2 160 58.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.4e-39 166.8 158 60.8
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.4e-39 166.8 134 61.9
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.0e-39 165.6 148 61.5
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 5.2e-39 164.9 144 61.1
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 8.8e-39 164.1 155 61.3
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.0e-38 162.9 114 67.5
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-38 162.9 166 53.6
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.6e-38 162.5 138 65.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 4.4e-38 161.8 89 76.4
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 4.4e-38 161.8 149 59.1
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 5.7e-38 161.4 93 74.2
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.2e-37 159.5 159 56.6
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 3.7e-37 158.7 161 58.4
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.7e-37 158.7 158 57.0
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 4.9e-37 158.3 80 81.2
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.3e-37 157.5 159 58.5
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.1e-36 157.1 175 55.4
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.8e-36 156.4 150 58.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.1e-36 155.2 140 62.1
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 5.4e-36 154.8 162 58.6
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.2e-35 153.7 150 56.0
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.0e-35 152.9 149 55.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.7e-35 151.0 79 81.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 2.3e-34 149.4 156 51.9
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 3.8e-34 148.7 86 80.2
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 5.0e-34 148.3 153 54.2
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 5.0e-34 148.3 130 60.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.6e-34 147.9 150 57.3
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.5e-33 146.0 87 75.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 4.3e-33 145.2 151 55.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 9.5e-33 144.1 159 50.9
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.2e-30 137.1 136 61.0
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.7e-29 133.3 286 36.7
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 3.7e-29 132.1 111 71.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.9e-29 131.7 178 40.4
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 6.4e-29 131.3 90 64.4
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 5.9e-27 124.8 116 50.9
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 7.8e-27 124.4 109 56.9
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.0e-26 124.0 137 47.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.2e-24 117.1 96 71.9
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 2.8e-24 115.9 68 70.6
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 3.6e-24 115.5 158 48.7
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.4e-23 113.6 53 84.9
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.1e-20 104.0 108 52.8
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-20 103.2 89 62.9
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.3e-18 96.3 80 52.5
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.0e-18 95.9 125 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.9e-18 95.5 90 52.2
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 9.5e-17 90.9 76 60.5
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 3.6e-16 89.0 75 49.3
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 8.9e-15 84.3 71 60.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.2e-14 84.0 98 58.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 4.4e-14 82.0 80 67.5
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.6e-11 72.0 76 43.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 6.0e-11 71.6 106 37.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.0e-10 70.9 46 63.0
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.7e-10 70.1 45 64.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.6e-08 63.5 89 41.6
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 4.7e-08 62.0 39 66.7
MCO15G631 Micromonas commoda HOM05D005372 ORTHO05D006593 9.9e-06 54.3 105 36.2


User provided reference genes

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