Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc112.75 Carica papaya HOM05D003446 ORTHO05D003915 9.3e-59 229.9 112 100.0
Lj1A143T43 Lonicera japonica HOM05D003446 ORTHO05D003915 5.5e-35 151.0 106 65.1
Actinidia25129 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.7e-34 148.7 106 67.0
Gohir.D03G118800 Gossypium hirsutum HOM05D003446 ORTHO05D003915 3.6e-34 148.3 106 67.9
Thecc.09G307400 Theobroma cacao HOM05D003446 ORTHO05D003915 3.6e-34 148.3 107 69.2
Duzib168G0523 Durio zibethinus HOM05D003446 ORTHO05D003915 7.9e-34 147.1 107 66.4
CSS0014722 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.0e-33 146.7 107 66.4
CiPaw.13G082900 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.0e-33 146.7 106 67.9
FAN21G1385 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.3e-33 145.6 106 67.0
Gohir.A03G048300 Gossypium hirsutum HOM05D003446 ORTHO05D003915 2.3e-33 145.6 106 67.0
FvH4_3g37870 Fragaria vesca HOM05D003446 ORTHO05D003915 3.0e-33 145.2 106 67.9
FAN11G3995 Fragaria x ananassa HOM05D003446 ORTHO05D003915 3.0e-33 145.2 106 67.9
FAN16G2611 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.1e-32 143.3 106 67.9
Gorai.003G125200 Gossypium raimondii HOM05D003446 ORTHO05D003915 1.1e-32 143.3 106 66.0
TAR402G0007 Trochodendron aralioides HOM05D003446 ORTHO05D003915 1.5e-32 142.9 110 62.7
Dinv14473 Davidia involucrata HOM05D003446 ORTHO05D003915 2.0e-32 142.5 107 65.4
FAN25G0028 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.0e-32 142.5 105 67.6
Lalb_Chr15g0082611 Lupinus albus HOM05D003446 ORTHO05D003915 7.4e-32 140.6 109 63.3
Nitab4.5_0002405g0050 Nicotiana tabacum HOM05D003446 ORTHO05D003915 9.7e-32 140.2 104 67.3
Solyc06g006000.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 9.7e-32 140.2 104 66.3
Prupe.6G063000 Prunus persica HOM05D003446 ORTHO05D003915 2.2e-31 139.0 109 65.1
PGSC0003DMG400020844 Solanum tuberosum HOM05D003446 ORTHO05D003915 2.2e-31 139.0 104 66.3
ECA236G4759 Erigeron canadensis HOM05D003446 ORTHO05D003915 2.8e-31 138.7 103 62.1
RcHm_v2.0_Chr5g0068081 Rosa chinensis HOM05D003446 ORTHO05D003915 2.8e-31 138.7 106 62.3
Sopen06g001980 Solanum pennellii HOM05D003446 ORTHO05D003915 3.7e-31 138.3 104 65.4
CANSAT54G0299 Cannabis sativa HOM05D003446 ORTHO05D003915 6.3e-31 137.5 113 61.9
Cfa011633 Carpinus fangiana HOM05D003446 ORTHO05D003915 6.3e-31 137.5 107 66.4
CAN.G538.3 Capsicum annuum HOM05D003446 ORTHO05D003915 8.2e-31 137.1 105 64.8
Rhsim13G0074100 Rhododendron simsii HOM05D003446 ORTHO05D003915 8.2e-31 137.1 108 62.0
Actinidia38843 Actinidia chinensis HOM05D003446 ORTHO05D003915 1.4e-30 136.3 107 63.6
CiPaw.13G083100 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.8e-30 136.0 107 63.6
COL.COLO4_19086 Corchorus olitorius HOM05D003446 ORTHO05D003915 1.8e-30 136.0 108 62.0
HanXRQChr05g0135531 Helianthus annuus HOM05D003446 ORTHO05D003915 1.8e-30 136.0 105 60.0
Nitab4.5_0000880g0040 Nicotiana tabacum HOM05D003446 ORTHO05D003915 1.8e-30 136.0 104 64.4
Atru.chr3.4056 Acer truncatum HOM05D003446 ORTHO05D003915 3.1e-30 135.2 106 63.2
MD03G1078000 Malus domestica HOM05D003446 ORTHO05D003915 5.3e-30 134.4 106 62.3
GSVIVG01024811001 Vitis vinifera HOM05D003446 ORTHO05D003915 5.3e-30 134.4 106 60.4
Oeu035016.1 Olea europaea HOM05D003446 ORTHO05D003915 6.9e-30 134.0 102 66.7
Peaxi162Scf00842g00015 Petunia axillaris HOM05D003446 ORTHO05D003915 6.9e-30 134.0 105 64.8
Eucgr.J01950 Eucalyptus grandis HOM05D003446 ORTHO05D003915 9.1e-30 133.7 105 61.0
Glyma.18G067500 Glycine max HOM05D003446 ORTHO05D003915 9.1e-30 133.7 109 62.4
QL93p2004_0016 Quercus lobata HOM05D003446 ORTHO05D003915 9.1e-30 133.7 119 58.0
EL10Ac7g16108 Beta vulgaris HOM05D003446 ORTHO05D003915 1.5e-29 132.9 103 66.0
QL01p027392 Quercus lobata HOM05D003446 ORTHO05D003915 1.5e-29 132.9 119 58.0
Phvul.006G063800 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 4.5e-29 131.3 108 63.0
Lj6g0014075 Lotus japonicus HOM05D003446 ORTHO05D003915 5.9e-29 131.0 108 62.0
VMungo0540G2401 Vigna mungo HOM05D003446 ORTHO05D003915 5.9e-29 131.0 106 61.3
arahy.Tifrunner.gnm1.ann1.TI8HRK Arachis hypogaea HOM05D003446 ORTHO05D003915 7.7e-29 130.6 110 59.1
MD11G1082600 Malus domestica HOM05D003446 ORTHO05D003915 7.7e-29 130.6 106 60.4
Peaxi162Scf00216g01419 Petunia axillaris HOM05D003446 ORTHO05D003915 1.0e-28 130.2 105 62.9
Cc01_g13730 Coffea canephora HOM05D003446 ORTHO05D003915 1.3e-28 129.8 107 59.8
Nn2g11351 Nelumbo nucifera HOM05D003446 ORTHO05D003915 1.3e-28 129.8 105 60.0
TWI79G0878 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 1.3e-28 129.8 104 61.5
AUR62001704 Chenopodium quinoa HOM05D003446 ORTHO05D003915 2.2e-28 129.0 105 61.0
Manes.02G122700 Manihot esculenta HOM05D003446 ORTHO05D003915 2.9e-28 128.6 108 63.0
PGR119G0877 Punica granatum HOM05D003446 ORTHO05D003915 2.9e-28 128.6 103 61.2
SalBow2G2679 Salvia bowleyana HOM05D003446 ORTHO05D003915 3.8e-28 128.3 105 61.0
Sabra09G0028900 Salix brachista HOM05D003446 ORTHO05D003915 8.5e-28 127.1 105 59.0
SGA_v2.0_scaffold77G25285 Striga asiatica HOM05D003446 ORTHO05D003915 1.4e-27 126.3 103 59.2
vmacro03001 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 1.4e-27 126.3 106 59.4
DCAR_018941 Daucus carota HOM05D003446 ORTHO05D003915 2.5e-27 125.6 105 62.9
Medtr3g462220 Medicago truncatula HOM05D003446 ORTHO05D003915 7.2e-27 124.0 106 61.3
AUR62020077 Chenopodium quinoa HOM05D003446 ORTHO05D003915 9.4e-27 123.6 102 59.8
Ca_14891_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 1.2e-26 123.2 105 59.0
TPR.G30108 Trifolium pratense HOM05D003446 ORTHO05D003915 1.2e-26 123.2 106 60.4
arahy.Tifrunner.gnm1.ann1.6X3X3D Arachis hypogaea HOM05D003446 ORTHO05D003915 1.6e-26 122.9 104 58.7
MSTRG.17869 Avicennia marina HOM05D003446 ORTHO05D003915 2.1e-26 122.5 103 60.2
CDE04G1890 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 2.1e-26 122.5 103 57.3
Hund18865 Selenicereus undatus HOM05D003446 ORTHO05D003915 2.1e-26 122.5 103 61.2
Aqoxy1G00728 Aquilegia oxysepala HOM05D003446 ORTHO05D003915 4.7e-26 121.3 104 56.7
Haze_24238 Corylus avellana HOM05D003446 ORTHO05D003915 4.7e-26 121.3 107 59.8
Sc06g0007160 Simmondsia chinensis HOM05D003446 ORTHO05D003915 2.3e-25 119.0 105 57.1
Potri.009G041100 Populus trichocarpa HOM05D003446 ORTHO05D003915 3.0e-25 118.6 105 55.2
CDE03G0004 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 1.5e-24 116.3 103 53.4
Psat5g162520 Pisum sativum HOM05D003446 ORTHO05D003915 1.5e-24 116.3 107 57.0
Migut.N00812 Erythranthe guttata HOM05D003446 ORTHO05D003915 2.6e-24 115.5 107 57.9
Ciclev10029307m.g Citrus clementina HOM05D003446 ORTHO05D003915 3.3e-24 115.2 111 54.1
HPP92_015338 Vanilla planifolia HOM05D003446 ORTHO05D003915 1.8e-22 109.4 105 54.3
CsaV3_1G035970 Cucumis sativus L. HOM05D003446 ORTHO05D003915 4.1e-22 108.2 107 55.1
ATR0618G355 Amborella trichopoda HOM05D003446 ORTHO05D003915 7.0e-22 107.5 104 52.9
unitig_26.g10204 Utricularia gibba HOM05D003446 ORTHO05D003915 7.0e-22 107.5 104 53.8
ClCG03G000970 Citrullus lanatus HOM05D003446 ORTHO05D003915 1.2e-21 106.7 108 53.7
MELO3C020570.2 Cucumis melo HOM05D003446 ORTHO05D003915 1.6e-21 106.3 108 53.7
Sed0017405 Sechium edule HOM05D003446 ORTHO05D003915 2.6e-21 105.5 106 52.8
SEGI_14129 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 2.2e-20 102.4 104 48.1
unitig_749.g13766 Utricularia gibba HOM05D003446 ORTHO05D003915 2.9e-20 102.1 104 51.9
Lsat_1_v5_gn_8_72121 Lactuca sativa HOM05D003446 ORTHO05D003915 1.1e-19 100.1 109 49.5
PSO384G2641 Papaver somniferum HOM05D003446 ORTHO05D003915 1.9e-19 99.4 109 50.5
Glyma.08G334500 Glycine max HOM05D003446 ORTHO05D003915 7.2e-19 97.4 105 49.5
Os03g0265900 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 8.0e-18 94.0 103 48.5
PSO339G6551 Papaver somniferum HOM05D003446 ORTHO05D003915 3.0e-17 92.0 110 49.1
Actinidia16456 Actinidia chinensis HOM05D003446 ORTHO05D003915 7.7e-13 77.4 104 40.4
Actinidia21252 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.2e-12 75.9 104 40.4
Os05g0451300 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 8.5e-12 73.9 104 43.3
MBI01_g34893_MAGBIO Magnolia biondii HOM05D003446 ORTHO05D003915 1.5e-11 73.2 72 51.4
Lsat_1_v5_gn_4_162940 Lactuca sativa HOM05D003446 ORTHO05D003915 4.2e-11 71.6 105 37.1
Gohir.D12G071400 Gossypium hirsutum HOM05D003446 ORTHO05D003915 7.2e-11 70.9 105 38.1
Zm00001eb288700 Zea mays HOM05D003446 ORTHO05D003915 1.2e-10 70.1 109 40.4
Phvul.002G014901 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 2.1e-10 69.3 105 37.1
Hma1.2p1_0017F.1_g011890 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 2.7e-10 68.9 105 37.1
vmacro17976 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 3.6e-10 68.6 103 36.9
BolC7t46649H Brassica oleracea HOM05D003446 ORTHO05D003915 6.1e-10 67.8 106 38.7
Thecc.01G064800 Theobroma cacao HOM05D003446 ORTHO05D003915 6.1e-10 67.8 104 34.6
Gorai.008G079000 Gossypium raimondii HOM05D003446 ORTHO05D003915 1.0e-09 67.0 105 37.1
Hma1.2p1_3153F.1_g333290 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 1.0e-09 67.0 105 37.1
AT4G37300 Arabidopsis thaliana HOM05D003446 ORTHO05D003915 1.4e-09 66.6 106 41.5
C07p62330 Brassica napus HOM05D003446 ORTHO05D003915 1.4e-09 66.6 106 38.7
HanXRQChr15g0491841 Helianthus annuus HOM05D003446 ORTHO05D003915 1.4e-09 66.6 104 39.4
Gohir.A12G074100 Gossypium hirsutum HOM05D003446 ORTHO05D003915 1.8e-09 66.2 105 37.1
BcaNung02048 Brassica carinata HOM05D003446 ORTHO05D003915 2.3e-09 65.9 106 38.7
MELO3C019205.2 Cucumis melo HOM05D003446 ORTHO05D003915 3.0e-09 65.5 104 35.6
Hund16368 Selenicereus undatus HOM05D003446 ORTHO05D003915 3.0e-09 65.5 105 37.1
AL7G13540 Arabidopsis lyrata HOM05D003446 ORTHO05D003915 4.0e-09 65.1 106 40.6
A01p01670 Brassica napus HOM05D003446 ORTHO05D003915 4.0e-09 65.1 106 40.6
Carub.0007s0298 Capsella rubella HOM05D003446 ORTHO05D003915 4.0e-09 65.1 105 41.0
Nn5g30439 Nelumbo nucifera HOM05D003446 ORTHO05D003915 4.0e-09 65.1 106 37.7
Sabra07G0044000 Salix brachista HOM05D003446 ORTHO05D003915 4.0e-09 65.1 107 38.3
EL10Ac6g15684 Beta vulgaris HOM05D003446 ORTHO05D003915 5.2e-09 64.7 107 39.3
TAR376G0778 Trochodendron aralioides HOM05D003446 ORTHO05D003915 5.2e-09 64.7 106 36.8
Dinv26875 Davidia involucrata HOM05D003446 ORTHO05D003915 6.8e-09 64.3 108 32.4
QL06p039988 Quercus lobata HOM05D003446 ORTHO05D003915 6.8e-09 64.3 108 35.2
BraA01t00157Z Brassica rapa HOM05D003446 ORTHO05D003915 8.8e-09 63.9 106 40.6
CiPaw.01G009700 Carya illinoinensis HOM05D003446 ORTHO05D003915 8.8e-09 63.9 108 38.0
TAR381G0964 Trochodendron aralioides HOM05D003446 ORTHO05D003915 8.8e-09 63.9 110 36.4
C01p01830 Brassica napus HOM05D003446 ORTHO05D003915 1.2e-08 63.5 106 40.6
CSS0024799 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.5e-08 63.2 103 34.0
GSVIVG01000208001 Vitis vinifera HOM05D003446 ORTHO05D003915 1.5e-08 63.2 109 33.9
Aa31LG6G14170 Aethionema arabicum HOM05D003446 ORTHO05D003915 2.0e-08 62.8 106 37.7
Dinv30043 Davidia involucrata HOM05D003446 ORTHO05D003915 2.0e-08 62.8 108 33.3
arahy.Tifrunner.gnm1.ann1.SZPL62 Arachis hypogaea HOM05D003446 ORTHO05D003915 2.6e-08 62.4 105 34.3
Hma1.2p1_0227F.1_g096150 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 2.6e-08 62.4 39 71.8
arahy.Tifrunner.gnm1.ann1.CXZ5TN Arachis hypogaea HOM05D003446 ORTHO05D003915 3.4e-08 62.0 107 36.4
THA.LOC104819864 Tarenaya hassleriana HOM05D003446 ORTHO05D003915 3.4e-08 62.0 106 36.8
Cpa.g.sc6.90 Carica papaya HOM05D003446 ORTHO05D003915 4.4e-08 61.6 110 35.5
Cc07_g06490 Coffea canephora HOM05D003446 ORTHO05D003915 4.4e-08 61.6 105 31.4
Duzib147G1454 Durio zibethinus HOM05D003446 ORTHO05D003915 4.4e-08 61.6 104 34.6
Glyma.01G190300 Glycine max HOM05D003446 ORTHO05D003915 4.4e-08 61.6 107 36.4
Lj2g0019205 Lotus japonicus HOM05D003446 ORTHO05D003915 4.4e-08 61.6 106 34.9
CARHR245700 Cardamine hirsuta HOM05D003446 ORTHO05D003915 5.7e-08 61.2 106 37.7
Prupe.6G227700 Prunus persica HOM05D003446 ORTHO05D003915 5.7e-08 61.2 110 34.5
Duzib187G1258 Durio zibethinus HOM05D003446 ORTHO05D003915 7.5e-08 60.8 105 33.3
SGA_v2.0_scaffold95G28709 Striga asiatica HOM05D003446 ORTHO05D003915 7.5e-08 60.8 73 45.2
BcaNung02537 Brassica carinata HOM05D003446 ORTHO05D003915 9.8e-08 60.5 106 38.7
BcaNung02538 Brassica carinata HOM05D003446 ORTHO05D003915 9.8e-08 60.5 106 38.7
BolC1t00175H Brassica oleracea HOM05D003446 ORTHO05D003915 9.8e-08 60.5 106 38.7
Eucgr.I00795 Eucalyptus grandis HOM05D003446 ORTHO05D003915 9.8e-08 60.5 108 37.0
VMungo1215G1902 Vigna mungo HOM05D003446 ORTHO05D003915 9.8e-08 60.5 106 38.7
CSS0013529 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.3e-07 60.1 105 36.2
Cfa004075 Carpinus fangiana HOM05D003446 ORTHO05D003915 1.3e-07 60.1 108 33.3
Thhalv10026399m.g Eutrema salsugineum HOM05D003446 ORTHO05D003915 1.3e-07 60.1 106 36.8
TPR.G26863 Trifolium pratense HOM05D003446 ORTHO05D003915 1.3e-07 60.1 109 36.7
TWI53G2047 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 1.3e-07 60.1 108 37.0
Sp7g34970 Schrenkiella parvula HOM05D003446 ORTHO05D003915 1.7e-07 59.7 106 36.8
SEGI_03543 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 1.7e-07 59.7 108 35.2
Haze_15338 Corylus avellana HOM05D003446 ORTHO05D003915 2.2e-07 59.3 106 32.1
CsaV3_2G035470 Cucumis sativus L. HOM05D003446 ORTHO05D003915 2.2e-07 59.3 106 33.0
Eucgr.I00751 Eucalyptus grandis HOM05D003446 ORTHO05D003915 2.2e-07 59.3 108 37.0
PGR004G1858 Punica granatum HOM05D003446 ORTHO05D003915 2.2e-07 59.3 107 33.6
Medtr5g016450 Medicago truncatula HOM05D003446 ORTHO05D003915 4.8e-07 58.2 108 37.0
FAN19G2839 Fragaria x ananassa HOM05D003446 ORTHO05D003915 6.3e-07 57.8 107 34.6
Manes.13G117600 Manihot esculenta HOM05D003446 ORTHO05D003915 8.3e-07 57.4 105 32.4
FAN28G0024 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.1e-06 57.0 106 34.9
FvH4_1g16910 Fragaria vesca HOM05D003446 ORTHO05D003915 1.4e-06 56.6 110 33.6
Psat2g168880 Pisum sativum HOM05D003446 ORTHO05D003915 1.4e-06 56.6 106 35.8
MD02G1179600 Malus domestica HOM05D003446 ORTHO05D003915 1.8e-06 56.2 106 34.0
Sc03g0001910 Simmondsia chinensis HOM05D003446 ORTHO05D003915 2.4e-06 55.8 102 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1259 Anthoceros agrestis HOM05D001230 ORTHO05D001067 3.1e-06 55.5 106 36.8
ATR0205G002 Amborella trichopoda HOM05D003446 ORTHO05D003915 4.1e-06 55.1 138 27.5
MSTRG.2847 Avicennia marina HOM05D003446 ORTHO05D003915 4.1e-06 55.1 105 35.2
Ciclev10026594m.g Citrus clementina HOM05D003446 ORTHO05D003915 4.1e-06 55.1 110 34.5
Peaxi162Scf00945g00123 Petunia axillaris HOM05D003446 ORTHO05D003915 4.1e-06 55.1 105 31.4
ClCG02G008200 Citrullus lanatus HOM05D003446 ORTHO05D003915 9.1e-06 53.9 104 32.7
PGSC0003DMG400024982 Solanum tuberosum HOM05D003446 ORTHO05D003915 9.1e-06 53.9 104 35.6


User provided reference genes

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