Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.0e-81 305.1 148 100.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.2e-75 285.0 148 89.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 7.2e-75 283.9 148 90.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 7.2e-75 283.9 147 88.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.6e-74 282.7 148 89.9
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 2.7e-74 282.0 148 89.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.6e-74 281.6 148 89.9
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.4e-73 279.6 148 89.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.4e-73 279.6 148 89.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.0e-73 278.5 148 87.8
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.0e-72 275.8 148 86.5
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.6e-72 275.4 147 87.8
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.3e-72 275.0 148 83.1
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 4.4e-72 274.6 147 87.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 4.4e-72 274.6 146 86.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 5.7e-72 274.2 143 88.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 7.4e-72 273.9 148 83.1
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.4e-72 273.9 147 87.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 7.4e-72 273.9 146 86.3
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.7e-71 272.7 148 83.1
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.8e-71 271.2 147 87.1
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.8e-71 271.2 147 87.1
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.8e-71 271.2 148 83.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 4.8e-71 271.2 147 86.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-70 269.6 147 81.6
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.4e-70 269.6 146 85.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.4e-70 268.9 147 84.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.4e-70 268.9 147 86.4
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.4e-70 268.9 147 81.6
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.1e-70 268.5 147 85.7
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.1e-70 268.5 147 85.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.0e-69 265.8 148 81.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.6e-69 265.4 148 80.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.4e-69 265.0 147 83.7
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 5.9e-69 264.2 148 82.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 7.7e-69 263.8 148 81.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 7.7e-69 263.8 148 81.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.3e-68 263.1 148 80.4
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.7e-68 262.7 148 81.1
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.2e-68 262.3 147 83.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.2e-68 262.3 148 79.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.2e-68 262.3 148 80.4
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.0e-68 261.2 147 80.3
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 5.0e-68 261.2 148 80.4
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 6.5e-68 260.8 148 79.1
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.1e-67 260.0 147 80.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.4e-67 259.6 148 79.7
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.4e-67 259.6 141 85.1
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.4e-67 259.6 148 80.4
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.4e-67 259.6 147 82.3
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.9e-67 259.2 148 81.1
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-67 258.8 148 78.4
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-67 258.8 148 78.4
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.5e-67 258.8 148 78.4
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.5e-67 258.8 148 78.4
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.2e-67 258.5 141 84.4
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.2e-67 258.5 148 79.7
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 3.2e-67 258.5 141 85.1
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 4.2e-67 258.1 148 81.8
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 4.2e-67 258.1 148 79.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 7.2e-67 257.3 148 77.0
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 9.4e-67 256.9 148 78.4
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.2e-66 256.5 148 78.4
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.6e-66 256.1 146 82.2
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.1e-66 255.8 148 77.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.1e-66 255.8 148 77.0
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 2.1e-66 255.8 148 77.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.7e-66 255.4 147 79.6
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.7e-66 255.4 147 80.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.7e-66 254.6 148 79.7
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.1e-66 254.2 144 81.9
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 6.1e-66 254.2 148 77.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 8.0e-66 253.8 148 77.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.0e-65 253.4 146 78.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.0e-65 253.4 139 82.7
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.8e-65 252.7 147 76.2
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.8e-65 252.7 143 80.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.0e-65 251.9 144 79.9
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 8.8e-65 250.4 148 78.4
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.7e-64 246.9 142 78.9
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.2e-63 245.7 141 78.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.8e-63 245.4 148 79.1
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.8e-63 245.4 147 75.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.8e-63 244.6 142 78.9
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.1e-62 243.4 144 76.4
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.4e-62 242.3 143 76.2
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 4.1e-62 241.5 144 75.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 4.1e-62 241.5 144 75.7
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 5.3e-62 241.1 143 76.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.3e-62 241.1 143 76.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 7.0e-62 240.7 143 76.2
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 9.1e-62 240.4 146 76.0
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 9.1e-62 240.4 143 76.2
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 9.1e-62 240.4 144 76.4
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.2e-61 240.0 144 76.4
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.2e-61 240.0 144 76.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.0e-61 239.2 137 78.1
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.9e-60 235.3 144 74.3
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 5.0e-60 234.6 143 74.1
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.5e-60 233.8 142 73.9
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 9.4e-59 230.3 149 73.2
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.2e-58 229.9 148 71.6
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.7e-58 228.8 148 70.9
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 6.1e-58 227.6 142 72.5
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.0e-57 226.9 147 70.1
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.4e-57 226.5 147 72.1
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.8e-57 226.1 124 84.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.8e-57 226.1 144 72.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.3e-57 225.7 147 68.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.0e-57 224.9 142 71.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 5.2e-57 224.6 136 73.5
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.5e-56 223.0 144 70.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.8e-55 218.8 146 66.4
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.7e-55 218.4 143 73.4
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.6e-50 203.0 109 88.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 8.8e-49 197.2 148 65.5
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.0e-45 186.0 148 56.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.3e-44 183.3 148 56.1
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.4e-41 173.3 123 65.9
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.4e-40 168.7 126 62.7
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.7e-40 167.9 149 55.7
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 4.9e-39 164.9 148 58.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.1e-38 163.7 123 61.8
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.6e-37 159.8 91 82.4
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.9e-36 155.6 103 68.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.9e-35 152.9 149 51.0
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.3e-35 152.1 149 51.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.1e-34 149.4 126 57.9
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-34 148.7 161 54.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 8.0e-34 147.5 161 53.4
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.6e-32 142.5 148 50.0
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.9e-31 139.0 149 49.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 6.4e-31 137.9 150 46.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.6e-29 133.3 90 70.0
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.0e-29 132.9 132 55.3
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.9e-23 112.5 67 83.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.1e-22 108.6 125 45.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.0e-17 92.0 63 65.1
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.2e-13 80.5 122 38.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.6e-13 80.1 53 69.8
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.8e-10 69.3 49 65.3
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.8e-09 66.6 62 54.8
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.0e-09 65.5 43 74.4
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.4e-08 62.4 58 51.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 2.2e-07 59.7 46 60.9


User provided reference genes

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