Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.9e-142 509.2 272 100.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.4e-78 295.4 173 80.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.7e-77 292.4 174 79.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 2.0e-75 286.6 177 76.3
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.7e-74 283.5 172 76.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.9e-73 280.0 172 77.3
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.5e-73 279.6 172 77.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.5e-73 279.6 177 75.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.2e-73 279.3 173 77.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.2e-73 278.9 176 76.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.2e-73 278.9 178 75.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.2e-73 278.9 171 76.0
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.5e-73 278.5 176 72.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 7.2e-73 278.1 167 78.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.7e-72 276.2 169 75.1
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.7e-72 275.4 172 76.2
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.7e-72 275.4 173 76.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 8.0e-72 274.6 177 72.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 4.0e-71 272.3 172 74.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.2e-71 271.9 175 74.3
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 6.8e-71 271.6 159 78.6
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 8.8e-71 271.2 172 73.8
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.8e-71 271.2 173 74.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 8.8e-71 271.2 172 76.2
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-70 270.8 175 73.7
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.5e-70 270.4 160 81.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.4e-70 269.2 172 73.3
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 3.4e-70 269.2 174 70.7
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.4e-70 268.9 171 73.7
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.7e-70 268.5 174 70.7
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 7.5e-70 268.1 168 74.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 7.5e-70 268.1 173 74.0
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 7.5e-70 268.1 171 71.9
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 9.8e-70 267.7 171 71.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.3e-69 267.3 171 72.5
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-69 267.3 171 72.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.3e-69 267.3 187 67.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.3e-69 267.3 176 69.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.2e-69 266.5 174 71.3
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.9e-69 265.4 173 71.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.9e-69 265.4 171 71.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.9e-69 265.4 178 71.9
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.9e-69 265.4 166 75.3
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.9e-69 265.4 172 73.8
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 4.9e-69 265.4 179 70.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.3e-69 265.0 172 72.7
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.1e-68 264.2 172 70.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.4e-68 263.8 194 68.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.4e-68 263.8 180 70.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.8e-68 263.5 172 70.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.4e-68 263.1 164 76.2
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.1e-68 262.7 162 75.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 4.1e-68 262.3 167 75.4
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.1e-68 262.3 171 71.3
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 4.1e-68 262.3 154 78.6
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.4e-68 261.9 173 71.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 5.4e-68 261.9 175 68.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 5.4e-68 261.9 171 70.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.0e-68 261.5 176 70.5
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.2e-67 260.8 173 71.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.2e-67 260.8 193 67.4
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-67 260.4 162 74.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.6e-67 260.4 177 70.6
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.7e-67 259.6 169 70.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.7e-67 259.6 171 71.3
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.7e-67 259.6 172 69.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.5e-67 259.2 169 71.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.5e-67 259.2 172 73.3
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 3.5e-67 259.2 166 72.9
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 4.5e-67 258.8 172 69.8
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 4.5e-67 258.8 171 69.6
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.9e-67 258.5 171 71.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 7.7e-67 258.1 166 71.7
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.3e-66 257.3 170 68.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-66 256.9 174 69.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-66 256.9 172 71.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.3e-66 256.5 203 66.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-66 256.5 176 67.6
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.9e-66 256.1 173 70.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.9e-66 256.1 157 75.2
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-66 255.4 169 69.8
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 5.0e-66 255.4 169 69.8
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.6e-66 255.0 171 69.0
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 8.6e-66 254.6 175 71.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 8.6e-66 254.6 162 75.9
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.6e-66 254.6 219 60.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.9e-65 253.4 174 70.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.5e-65 253.1 175 69.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.2e-64 250.8 168 72.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.1e-64 250.0 169 71.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.8e-64 249.6 171 70.8
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.8e-64 249.6 170 68.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 4.7e-64 248.8 168 69.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-63 247.7 167 71.9
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.3e-63 246.5 167 71.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.0e-63 245.7 171 70.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.2e-62 244.2 167 69.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.4e-62 242.7 168 67.3
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 9.8e-62 241.1 173 65.3
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.9e-61 239.6 173 64.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 3.7e-61 239.2 168 66.7
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.7e-61 239.2 215 56.7
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 3.7e-61 239.2 170 64.1
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.4e-61 238.4 168 66.7
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.3e-61 238.0 169 66.9
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.3e-61 238.0 168 66.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-60 237.7 171 69.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 5.4e-60 235.3 156 69.2
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.4e-60 235.3 142 76.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 4.6e-59 232.3 134 80.6
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.8e-59 231.5 172 64.5
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.0e-58 231.1 171 64.9
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.7e-58 230.3 167 63.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.0e-58 229.6 170 63.5
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 3.9e-58 229.2 173 63.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 8.6e-58 228.0 172 64.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.6e-58 228.0 172 64.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.6e-58 228.0 172 64.5
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.1e-57 227.6 144 72.9
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.5e-57 227.3 173 63.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.9e-57 226.9 160 68.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-57 226.5 172 63.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.2e-56 224.2 172 62.2
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.1e-56 223.4 174 63.2
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.1e-56 223.4 150 69.3
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.8e-56 223.0 193 60.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 8.0e-56 221.5 225 52.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.0e-55 221.1 133 78.2
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.8e-55 220.3 147 68.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.1e-55 219.5 139 74.8
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.1e-55 219.5 169 63.9
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.1e-55 219.5 160 63.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 6.8e-55 218.4 136 73.5
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.7e-53 213.8 183 59.6
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.7e-53 212.6 155 64.5
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 7.0e-52 208.4 133 72.9
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.6e-51 207.2 130 77.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.0e-50 204.5 175 60.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-50 203.4 137 68.6
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.9e-49 200.3 138 67.4
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.3e-49 198.4 130 75.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 7.3e-49 198.4 137 67.2
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.1e-48 194.9 130 69.2
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.6e-43 180.6 159 52.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 3.5e-43 179.5 127 66.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.3e-42 177.6 138 62.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.8e-31 140.6 129 58.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.0e-31 139.4 91 69.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-27 127.9 92 63.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.7e-27 126.7 90 71.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-26 124.8 115 56.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-25 120.2 178 43.3
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 2.6e-22 110.2 156 37.2
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-20 104.8 79 64.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.4e-20 103.6 123 39.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.7e-18 95.1 160 36.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.3e-17 92.8 107 51.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.4e-15 87.8 102 39.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.5e-14 84.3 172 27.3
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.4e-14 83.2 117 35.9
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.1e-12 78.2 74 55.4
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.9e-11 72.0 47 66.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.5e-09 67.0 56 57.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 5.8e-06 55.8 48 58.3
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 1.0e-05 55.1 63 44.4


User provided reference genes

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