Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 1.0e-210 736.5 375 100.0
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 2.0e-161 572.8 376 77.4
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 2.5e-156 555.8 376 75.3
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 4.2e-156 555.1 374 75.4
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 2.3e-154 549.3 374 73.3
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 8.8e-154 547.4 371 74.7
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 2.0e-153 546.2 368 73.6
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 5.7e-153 544.7 371 74.4
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 5.7e-153 544.7 373 74.5
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 1.4e-151 540.0 377 73.5
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 4.1e-151 538.5 376 73.1
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 7.0e-151 537.7 371 73.9
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 9.1e-151 537.3 371 73.9
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 2.0e-150 536.2 336 77.4
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 2.7e-150 535.8 371 72.8
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 3.5e-150 535.4 375 72.8
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 3.5e-150 535.4 375 72.8
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 4.5e-150 535.0 371 73.0
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 1.3e-149 533.5 375 72.5
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 1.7e-149 533.1 371 72.8
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 1.7e-149 533.1 371 72.5
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 2.2e-149 532.7 371 73.9
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 2.2e-149 532.7 377 72.7
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 3.8e-149 531.9 367 73.3
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 6.5e-149 531.2 371 72.8
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 3.2e-148 528.9 377 71.4
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 7.2e-148 527.7 370 72.2
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 9.4e-148 527.3 368 71.2
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 1.6e-147 526.6 374 71.7
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 2.1e-147 526.2 361 72.3
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 2.7e-147 525.8 377 70.8
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 4.7e-147 525.0 370 71.9
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 1.0e-146 523.9 374 71.9
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 1.0e-146 523.9 361 72.3
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 1.4e-146 523.5 370 71.6
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 1.4e-146 523.5 372 70.2
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 2.3e-146 522.7 373 71.8
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 4.0e-146 521.9 375 69.6
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 8.8e-146 520.8 376 70.5
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 1.2e-145 520.4 369 71.5
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 1.2e-145 520.4 370 71.4
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 1.2e-145 520.4 369 71.8
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 1.2e-145 520.4 381 70.3
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 3.4e-145 518.8 369 71.5
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 5.7e-145 518.1 378 70.1
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 7.5e-145 517.7 309 80.9
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 7.5e-145 517.7 361 71.5
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 1.1e-143 513.8 367 71.7
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 4.1e-143 511.9 309 79.6
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 7.0e-143 511.1 374 68.2
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 7.0e-143 511.1 375 70.9
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 1.2e-142 510.4 339 73.2
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 1.2e-142 510.4 375 70.4
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 2.7e-142 509.2 374 69.5
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 3.5e-142 508.8 374 70.1
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 4.5e-142 508.4 383 68.9
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 7.7e-142 507.7 373 69.4
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 1.3e-141 506.9 377 70.6
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 1.7e-141 506.5 313 78.6
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 2.9e-141 505.8 378 67.2
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 3.8e-141 505.4 383 68.7
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 5.0e-141 505.0 420 64.3
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 6.6e-141 504.6 313 78.3
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 6.6e-141 504.6 375 69.1
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 2.5e-140 502.7 379 69.1
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 5.5e-140 501.5 391 67.5
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 3.0e-138 495.7 408 65.0
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 8.9e-138 494.2 369 69.9
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 8.9e-138 494.2 382 68.1
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 9.8e-137 490.7 372 68.8
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 8.3e-136 487.6 372 68.5
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 7.0e-135 484.6 374 66.8
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 1.6e-134 483.4 358 69.6
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 1.3e-133 480.3 297 77.4
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 3.9e-133 478.8 363 67.8
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 3.9e-133 478.8 364 65.1
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 1.5e-132 476.9 377 67.6
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 1.5e-132 476.9 376 67.3
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 4.3e-132 475.3 381 67.5
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 6.1e-131 471.5 288 78.8
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 5.2e-130 468.4 299 76.9
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 9.8e-129 464.2 376 62.0
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 1.4e-127 460.3 369 62.9
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 1.9e-127 459.9 360 66.9
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 5.4e-127 458.4 280 79.6
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 1.2e-126 457.2 280 78.9
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 1.1e-122 444.1 351 64.7
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 1.4e-122 443.7 309 68.6
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 8.6e-117 424.5 463 51.4
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 6.2e-107 391.7 249 77.1
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 8.9e-106 387.9 373 56.0
HPP92_002355 Vanilla planifolia HOM05D006971 ORTHO05D009076 8.7e-101 371.3 364 54.9
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 3.1e-98 362.8 236 77.5
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 2.0e-97 360.1 327 54.1
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.2e-94 350.9 367 52.3
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.2e-94 350.9 367 52.3
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 2.1e-91 340.1 283 60.4
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 2.4e-90 336.7 205 80.5
SMO111G0229 Selaginella moellendorffii HOM05D006971 ORTHO05D009076 4.5e-89 332.4 275 58.2
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 9.9e-89 331.3 252 65.1
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 1.2e-65 254.6 186 63.4
ClCG04G012280 Citrullus lanatus HOM05D006971 ORTHO05D009076 1.0e-48 198.4 153 63.4
vmacro17545 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 3.2e-47 193.4 159 61.6
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 1.6e-41 174.5 196 43.9
Dinv19957 Davidia involucrata HOM05D006971 ORTHO05D009076 4.5e-41 172.9 125 70.4
BcaB03g13848 Brassica carinata HOM05D006971 ORTHO05D009076 1.9e-39 167.5 150 61.3
Thhalv10019619m.g Eutrema salsugineum HOM05D006971 ORTHO05D009076 2.4e-34 150.6 127 63.0
SEGI_28088 Sequoiadendron giganteum HOM05D006971 ORTHO05D009076 4.1e-26 123.2 130 44.6
Actinidia37630 Actinidia chinensis HOM05D000001 ORTHO05D008780 1.6e-25 121.3 85 71.8
MD06G1192800 Malus domestica HOM05D006971 ORTHO05D009076 6.4e-19 99.4 84 61.9
HPP92_027582 Vanilla planifolia HOM05D006971 ORTHO05D009076 3.2e-18 97.1 133 44.4
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 4.3e-07 60.1 48 64.6
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 4.3e-07 60.1 48 64.6
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.7e-06 56.6 47 59.6


User provided reference genes

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