Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.1e-125 451.8 233 100.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.0e-99 367.1 231 77.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.3e-99 366.7 231 78.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.0e-99 365.5 231 77.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 3.9e-99 365.2 228 78.1
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 8.6e-99 364.0 231 77.9
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.5e-98 363.2 228 78.9
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.5e-98 363.2 227 79.3
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.9e-98 362.8 231 78.8
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.3e-98 362.1 231 76.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.3e-98 362.1 231 77.5
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.3e-98 360.9 231 77.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 9.5e-98 360.5 228 79.4
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-97 360.1 231 77.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.6e-97 358.6 233 76.0
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 8.0e-97 357.5 228 75.4
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.8e-96 356.3 227 78.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.3e-96 355.9 233 76.0
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 4.0e-96 355.1 231 76.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.8e-96 354.4 228 76.3
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.4e-95 352.1 233 75.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 4.4e-95 351.7 231 76.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.4e-95 351.7 231 76.6
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 4.4e-95 351.7 228 75.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.4e-95 351.7 231 76.2
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 5.8e-95 351.3 233 73.4
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-94 349.7 227 76.2
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.7e-94 349.7 228 76.8
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.9e-94 348.2 229 75.1
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.1e-93 347.1 233 72.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-93 346.3 227 74.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.9e-93 346.3 227 76.7
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.4e-93 345.9 227 74.0
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.4e-93 345.9 229 74.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.2e-93 345.5 231 74.5
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.2e-93 345.5 230 74.8
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.2e-93 345.5 233 73.8
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.4e-93 344.7 229 73.8
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 7.0e-93 344.4 227 75.3
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.0e-93 344.4 227 74.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.2e-93 344.0 231 74.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 9.2e-93 344.0 233 73.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 9.2e-93 344.0 227 73.6
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.6e-92 343.2 231 71.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.6e-92 343.2 229 74.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.0e-92 342.8 227 73.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 4.6e-92 341.7 231 74.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.6e-92 341.7 231 74.5
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.0e-92 341.3 227 73.6
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 6.0e-92 341.3 227 73.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 7.8e-92 340.9 228 73.7
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.0e-91 340.5 227 76.2
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.7e-91 339.7 227 73.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.0e-91 339.0 229 72.9
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 5.0e-91 338.2 231 71.0
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 6.6e-91 337.8 229 72.5
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.6e-91 337.8 227 74.0
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 8.6e-91 337.4 227 74.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 8.6e-91 337.4 229 73.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 73.6
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-90 337.0 233 70.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.1e-90 337.0 230 70.4
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.5e-90 336.7 227 73.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.9e-90 336.3 227 74.4
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.9e-90 336.3 218 77.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 2.5e-90 335.9 227 72.7
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.5e-90 335.9 209 78.5
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.5e-90 335.9 223 74.4
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.3e-90 335.1 229 72.1
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 4.3e-90 335.1 230 70.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 5.6e-90 334.7 228 72.8
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.1e-89 332.8 231 70.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.8e-89 332.4 227 71.8
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.8e-89 332.4 228 70.6
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.6e-89 332.0 227 72.2
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.6e-89 332.0 230 70.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.2e-89 331.3 227 72.2
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.1e-89 330.9 229 72.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.1e-89 330.9 231 71.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.4e-88 330.1 229 72.1
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.4e-88 330.1 229 69.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.4e-88 330.1 227 72.7
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.3e-88 329.3 227 71.8
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.3e-88 329.3 231 69.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 3.1e-88 328.9 231 69.7
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.0e-88 328.6 228 69.7
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 8.9e-88 327.4 231 69.3
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.2e-87 327.0 266 65.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 71.8
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 232 70.7
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 231 69.3
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.4e-87 325.5 227 70.5
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.4e-87 325.1 228 69.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 4.4e-87 325.1 228 70.6
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.3e-86 323.6 228 68.9
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.7e-86 323.2 228 68.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.7e-86 322.0 228 68.4
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.7e-86 322.0 232 70.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 8.3e-86 320.9 232 68.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-85 320.5 202 78.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.4e-85 320.1 228 69.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-85 319.7 228 69.7
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.4e-85 319.3 228 68.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.2e-85 318.9 228 68.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.1e-85 318.5 228 68.4
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 4.1e-85 318.5 226 68.6
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.1e-85 318.5 228 68.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-84 317.0 223 67.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.6e-84 316.6 228 69.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.0e-84 314.7 228 67.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.9e-83 312.0 214 71.5
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.1e-83 311.6 313 54.0
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.6e-83 311.2 231 69.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-82 309.7 228 66.2
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 3.6e-81 305.4 233 68.2
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 3.1e-80 302.4 227 68.3
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.8e-80 301.2 221 69.2
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.2e-79 300.4 227 64.3
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 7.6e-79 297.7 197 75.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.3e-78 297.0 195 75.9
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.9e-78 295.8 229 65.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 6.4e-78 294.7 204 70.6
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.4e-78 294.7 226 64.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.1e-77 293.9 227 63.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.2e-76 290.4 220 66.4
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 9.6e-74 280.8 223 63.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.3e-70 270.4 195 67.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.3e-67 260.4 178 73.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.6e-65 253.4 238 57.1
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.4e-62 241.1 182 68.7
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-61 240.0 148 81.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 4.2e-61 238.8 221 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.1e-60 236.5 227 52.0
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.1e-60 236.5 223 53.8
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.4e-58 228.0 213 57.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.1e-57 224.6 133 82.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-56 224.2 144 77.8
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.1e-56 222.6 226 52.7
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.1e-51 205.3 124 83.1
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.8e-48 196.8 168 63.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-48 196.8 144 69.4
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.0e-47 193.4 136 69.1
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 5.8e-47 191.8 143 69.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-42 177.6 140 60.7
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.2e-41 173.3 134 64.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-41 173.3 119 70.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.1e-40 169.1 224 42.9
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 5.3e-40 168.7 147 61.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.3e-38 164.1 142 57.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.6e-36 155.6 190 45.3
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 8.7e-35 151.4 194 45.9
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-33 146.7 126 61.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-33 146.4 117 60.7
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 8.2e-33 144.8 85 80.0
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.1e-32 144.4 88 80.7
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 9.1e-32 141.4 109 67.0
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 5.9e-31 138.7 102 70.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.0e-30 137.9 91 76.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-29 133.7 106 59.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.9e-29 133.7 85 74.1
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.9e-29 133.7 117 59.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 7.2e-29 131.7 82 79.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-27 127.5 85 74.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 7.4e-26 121.7 95 67.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.3e-25 120.9 85 69.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 4.8e-25 119.0 69 81.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.8e-24 117.1 78 75.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 4.1e-24 115.9 77 76.6
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.3e-24 115.5 85 67.1
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.8e-22 109.4 85 65.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 6.5e-22 108.6 98 59.2
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-20 104.4 145 42.8
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 4.7e-20 102.4 88 61.4
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-19 100.5 63 77.8
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 3.1e-16 89.7 61 70.5
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 9.1e-16 88.2 194 32.0
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.6e-15 86.7 51 82.4
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.2e-14 83.6 62 62.9
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-13 79.0 60 65.0
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.0e-11 73.2 187 28.9
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.0e-11 72.8 67 58.2
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.5e-10 70.9 49 67.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.3e-10 69.7 187 27.8


User provided reference genes

Program Settings