Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.7e-34 147.5 68 100.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.0e-28 129.4 65 90.8
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 7.4e-27 123.2 65 86.2
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 9.7e-27 122.9 65 86.2
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.7e-26 120.9 65 86.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 3.7e-26 120.9 65 86.2
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 3.7e-26 120.9 64 85.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 3.7e-26 120.9 65 86.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 4.8e-26 120.6 65 84.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 6.3e-26 120.2 65 83.1
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 6.3e-26 120.2 65 86.2
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 6.3e-26 120.2 65 86.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 6.3e-26 120.2 65 86.2
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 8.2e-26 119.8 65 86.2
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 8.2e-26 119.8 65 84.6
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 8.2e-26 119.8 65 84.6
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.1e-25 119.4 65 86.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 1.1e-25 119.4 65 83.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.4e-25 118.2 65 83.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.4e-25 118.2 65 84.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 2.4e-25 118.2 65 83.1
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 5.3e-25 117.1 65 80.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 7.0e-25 116.7 65 80.0
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 7.0e-25 116.7 65 80.0
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 7.0e-25 116.7 65 83.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 7.0e-25 116.7 65 83.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 9.1e-25 116.3 65 83.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 9.1e-25 116.3 65 84.6
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 9.1e-25 116.3 65 83.1
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.2e-24 115.9 65 83.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 1.2e-24 115.9 65 84.6
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.2e-24 115.9 65 81.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-24 115.5 65 83.1
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 2.0e-24 115.2 65 83.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.0e-24 115.2 65 81.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 2.0e-24 115.2 65 81.5
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 2.0e-24 115.2 65 80.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.0e-24 115.2 65 80.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 2.6e-24 114.8 65 80.0
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 78.5
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 78.5
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 78.5
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 81.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 81.5
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 81.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 80.0
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 80.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 3.5e-24 114.4 65 81.5
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 4.5e-24 114.0 64 81.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 4.5e-24 114.0 65 80.0
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 4.5e-24 114.0 64 81.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 7.7e-24 113.2 64 82.8
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 7.7e-24 113.2 65 80.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.0e-23 112.8 65 80.0
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-23 112.5 63 82.5
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.3e-23 112.5 65 80.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.3e-23 112.5 64 81.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 1.3e-23 112.5 64 82.8
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.3e-23 112.5 64 82.8
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 1.7e-23 112.1 65 81.5
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 2.2e-23 111.7 65 83.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 2.9e-23 111.3 65 78.5
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 3.8e-23 110.9 64 79.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.8e-23 110.9 65 80.0
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.8e-23 110.9 65 80.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 5.0e-23 110.5 65 78.5
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 6.5e-23 110.2 65 76.9
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 6.5e-23 110.2 65 76.9
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 6.5e-23 110.2 65 76.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 8.5e-23 109.8 65 75.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.5e-22 109.0 64 79.7
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.9e-22 108.6 64 76.6
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.5e-22 108.2 64 78.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 2.5e-22 108.2 65 75.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 3.2e-22 107.8 65 76.9
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 3.2e-22 107.8 64 76.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.2e-22 107.8 65 78.5
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 7.2e-22 106.7 65 75.4
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 7.2e-22 106.7 65 76.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 9.4e-22 106.3 65 76.9
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 1.2e-21 105.9 65 75.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 1.2e-21 105.9 65 75.4
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 1.6e-21 105.5 62 75.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 2.1e-21 105.1 65 75.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.6e-21 104.4 64 73.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.6e-21 104.4 64 73.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.6e-21 104.4 64 76.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 6.1e-21 103.6 65 72.3
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 6.1e-21 103.6 64 73.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 6.1e-21 103.6 64 73.4
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 6.1e-21 103.6 63 77.8
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 8.0e-21 103.2 65 75.4
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 1.0e-20 102.8 64 73.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 1.0e-20 102.8 64 73.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.0e-20 102.8 65 75.4
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.4e-20 102.4 65 73.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.8e-20 102.1 65 75.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.3e-20 101.7 64 73.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.3e-20 101.7 64 73.4
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.3e-20 101.7 65 69.2
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 2.3e-20 101.7 64 75.0
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 2.3e-20 101.7 65 72.3
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.2e-20 100.5 64 75.0
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 5.7e-19 97.1 65 67.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 5.7e-19 97.1 65 69.2
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 7.5e-19 96.7 65 69.2
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.3e-18 95.9 66 72.7
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 1.7e-18 95.5 65 75.4
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 1.8e-17 92.0 65 67.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 3.1e-17 91.3 65 66.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 4.7e-13 77.4 53 66.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 4.7e-13 77.4 45 75.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.0e-13 76.6 66 54.5
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.0e-12 74.7 53 66.0
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 5.2e-12 73.9 50 68.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.5e-11 72.4 65 50.8
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.6e-08 62.4 49 61.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 4.5e-08 60.8 49 55.1


User provided reference genes

Program Settings