Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 0.0e+00 1656.0 828 100.0
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1140.9 827 68.0
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1134.8 813 68.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 0.0e+00 1125.2 830 68.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1124.8 810 67.8
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1120.1 827 66.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 0.0e+00 1109.4 834 67.1
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 0.0e+00 1107.4 836 65.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 0.0e+00 1094.0 827 65.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1078.2 814 65.4
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 5.6e-310 1067.4 845 62.6
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.2e-307 1059.7 833 63.5
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.2e-306 1055.4 788 65.5
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 6.0e-304 1047.3 803 64.8
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 2.3e-303 1045.4 824 64.0
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.3e-302 1040.4 829 62.7
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.2e-301 1039.6 818 63.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.4e-300 1036.2 808 64.6
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.8e-300 1035.8 870 61.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.8e-300 1035.8 818 62.3
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.8e-300 1035.8 829 62.5
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.4e-300 1035.4 829 63.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.4e-300 1035.4 747 68.5
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.0e-300 1034.6 832 61.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 9.9e-299 1030.0 846 61.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.3e-298 1029.6 820 61.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.2e-298 1028.9 771 66.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.2e-296 1023.1 818 62.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.7e-296 1021.9 836 60.9
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 3.0e-295 1018.5 838 60.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.9e-292 1007.3 842 59.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 3.4e-291 1005.0 797 60.6
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 4.5e-291 1004.6 802 61.3
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 5.8e-291 1004.2 790 61.4
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.2e-290 1002.3 828 61.2
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.2e-290 1002.3 785 65.2
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 4.9e-290 1001.1 828 59.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 8.4e-290 1000.3 818 60.0
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.4e-289 999.6 830 59.4
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.4e-289 999.6 790 61.3
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.9e-288 993.8 845 59.3
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.0e-287 993.4 818 59.9
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.3e-287 992.3 845 58.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.1e-287 991.1 841 58.3
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 5.1e-287 991.1 815 62.3
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.9e-286 989.2 823 59.8
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 2.5e-286 988.8 824 61.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 2.5e-286 988.8 827 62.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 5.6e-286 987.6 841 58.4
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.6e-285 986.1 785 62.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.1e-284 983.4 827 61.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.8e-284 982.6 813 61.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 3.1e-284 981.9 820 59.6
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.2e-283 979.9 820 58.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.0e-283 979.2 824 61.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-283 978.8 889 56.9
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 5.8e-283 977.6 807 60.2
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 6.4e-282 974.2 809 61.8
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.4e-281 972.2 824 61.3
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-281 972.2 846 58.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.3e-279 965.7 837 58.1
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 6.7e-279 964.1 808 59.5
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.1e-277 959.1 769 61.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.6e-275 952.2 825 57.6
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 5.8e-275 951.0 748 63.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.0e-274 950.3 830 58.8
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 6.5e-274 947.6 826 59.1
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 6.5e-274 947.6 814 58.4
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.9e-273 946.0 825 59.9
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 7.1e-273 944.1 827 59.1
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 7.1e-273 944.1 827 59.1
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 2.1e-272 942.6 851 58.5
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.1e-272 942.6 826 57.4
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 4.6e-272 941.4 823 58.3
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.0e-271 940.3 817 59.5
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.8e-271 939.5 680 68.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.9e-271 938.3 845 56.4
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 6.7e-271 937.6 807 57.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.5e-270 936.4 809 57.7
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.3e-270 935.3 719 65.1
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 7.4e-270 934.1 798 58.1
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.6e-269 932.9 769 60.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.8e-269 932.2 821 57.7
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 3.7e-269 931.8 820 58.5
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.4e-268 929.9 829 55.6
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.1e-268 928.7 809 56.9
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 4.1e-268 928.3 835 58.7
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 3.2e-265 918.7 801 57.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 3.2e-265 918.7 760 59.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 6.7e-263 911.0 820 56.5
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.9e-262 909.4 825 57.1
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.9e-262 909.4 827 56.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 2.5e-262 909.1 798 58.0
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.4e-257 890.6 773 57.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.7e-256 889.0 821 54.4
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.1e-255 884.8 724 60.1
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.3e-253 880.2 706 61.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.1e-252 875.5 776 56.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 9.1e-252 874.0 774 57.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 3.2e-249 865.5 811 55.0
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 5.5e-249 864.8 828 55.0
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.6e-248 863.2 692 62.7
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.0e-243 846.3 830 52.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.8e-242 842.0 842 53.2
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.9e-241 839.7 800 53.9
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.5e-233 811.6 769 56.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.7e-227 791.2 693 56.3
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.9e-213 746.1 677 55.2
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.2e-212 742.7 655 56.3
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.6e-211 740.3 845 46.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.0e-211 740.0 912 45.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.0e-211 740.0 829 46.6
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.7e-211 739.6 514 67.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.6e-211 738.8 822 47.8
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 6.2e-208 728.4 825 47.6
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.3e-205 720.7 830 47.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.3e-205 720.7 842 48.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 2.2e-205 719.9 611 59.2
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.4e-196 690.6 809 45.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 5.4e-188 662.1 706 50.1
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.1e-186 655.6 788 45.3
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.9e-177 627.1 689 48.5
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 5.3e-175 619.0 715 47.4
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.6e-174 615.1 734 46.2
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 5.9e-150 535.8 385 66.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 2.4e-143 513.8 526 51.0
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.1e-143 513.1 451 57.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.9e-141 506.9 341 73.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.2e-140 503.4 340 71.5
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.3e-133 481.5 726 39.7
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.4e-129 465.7 438 55.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.6e-107 393.7 624 38.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.7e-104 384.8 319 58.9
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.5e-102 377.1 790 31.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.6e-99 368.2 382 48.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 7.0e-95 352.8 868 29.4
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 9.2e-95 352.4 351 49.3
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-88 332.0 461 40.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 8.6e-85 319.3 408 44.1
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.5e-76 292.0 306 50.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.4e-71 275.4 510 33.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.2e-71 273.9 248 54.8
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 6.2e-59 233.4 197 61.9
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.2e-56 224.9 179 65.4
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.9e-56 223.8 176 67.0
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-30 138.7 135 53.3
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 2.8e-27 128.3 116 47.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-23 116.3 111 53.2
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 8.8e-21 106.7 108 50.0
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.4e-20 103.6 115 43.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.1e-18 99.8 87 59.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 6.3e-11 73.9 88 43.2
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.2e-11 73.6 66 42.4
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.8e-10 72.4 36 86.1
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 5.9e-09 67.4 67 47.8
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.8e-08 64.7 44 59.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.9e-07 62.4 47 61.7
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.2e-06 59.7 199 28.1
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 3.6e-06 58.2 165 26.7


User provided reference genes

Program Settings