Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.4e-306 1054.7 538 100.0
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 6.4e-222 774.2 540 71.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 9.5e-218 760.4 540 70.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.8e-216 754.2 542 70.8
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.0e-215 752.7 538 69.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 4.4e-207 724.9 536 68.5
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 4.4e-207 724.9 539 68.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 9.9e-207 723.8 539 68.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.7e-206 723.0 542 67.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.2e-206 722.6 539 68.3
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.9e-206 722.2 538 68.8
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.9e-206 722.2 542 67.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 6.4e-206 721.1 539 68.6
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.2e-205 718.8 542 66.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 5.4e-205 718.0 540 69.6
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.2e-204 716.8 539 68.3
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.6e-204 716.5 540 68.5
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.6e-204 716.5 540 68.0
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.7e-204 715.7 542 67.9
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.7e-204 715.7 542 67.9
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.1e-202 710.3 540 66.7
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 4.3e-202 708.4 539 68.1
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 4.3e-202 708.4 540 67.6
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.2e-201 706.8 540 67.8
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.1e-200 703.7 539 66.4
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.4e-199 698.7 547 64.4
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.8e-199 698.0 547 64.4
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 9.9e-199 697.2 541 65.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.2e-198 696.0 539 65.7
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 4.2e-197 691.8 539 65.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 3.0e-195 685.6 540 64.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.0e-195 685.6 539 64.2
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 3.0e-195 685.6 540 65.7
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.3e-193 680.2 540 63.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.6e-193 678.7 531 64.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 4.8e-193 678.3 539 63.3
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 8.1e-193 677.6 535 63.4
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.1e-193 677.6 582 60.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.1e-192 677.2 539 63.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.4e-192 676.8 539 62.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.4e-192 676.8 502 66.5
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-192 675.6 540 62.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.2e-190 669.5 540 62.6
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.8e-190 668.7 539 63.1
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 4.9e-190 668.3 583 60.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 8.4e-190 667.5 538 62.3
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-189 666.8 543 63.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 2.4e-189 666.0 583 58.8
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 4.2e-189 665.2 539 62.9
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 7.1e-189 664.5 542 62.0
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.7e-188 662.5 541 61.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 7.8e-188 661.0 541 61.7
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 8.7e-187 657.5 543 61.3
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-186 657.1 546 63.4
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.9e-186 656.4 543 62.2
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.5e-186 656.0 537 63.5
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.5e-186 656.0 543 61.7
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.3e-186 655.2 546 63.2
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 7.3e-186 654.4 544 61.9
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.1e-185 652.9 537 61.8
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 8.1e-185 651.0 530 62.6
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.4e-184 650.2 542 61.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.1e-184 649.0 524 61.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.2e-183 647.1 543 61.3
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.1e-181 637.9 544 59.7
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.7e-180 636.0 542 59.4
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.7e-180 636.0 533 61.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.0e-179 634.0 541 59.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.0e-179 632.5 541 59.1
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.9e-179 632.1 542 58.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.9e-179 632.1 532 60.9
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.9e-179 632.1 541 60.8
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 8.7e-179 630.9 525 61.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.1e-178 630.6 513 62.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.9e-178 629.8 543 59.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.3e-178 629.0 543 59.5
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.3e-178 628.6 542 58.7
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 4.3e-178 628.6 542 58.7
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-177 626.7 583 56.8
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.1e-177 624.4 583 56.4
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-176 623.6 583 56.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-176 620.9 583 56.1
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.5e-175 620.2 538 60.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-175 619.4 583 56.1
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.9e-174 615.9 529 60.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.1e-173 614.0 534 60.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.3e-173 610.9 520 60.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-172 610.1 542 57.9
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.7e-172 609.4 547 59.0
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.3e-171 606.3 544 55.1
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 5.7e-170 601.7 541 56.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.1e-168 597.4 540 58.0
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.0e-166 590.9 536 56.3
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 5.0e-166 588.6 533 58.5
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.1e-164 583.2 534 57.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.2e-159 567.4 501 56.3
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.2e-159 567.4 503 59.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.5e-159 565.5 412 68.4
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.2e-157 559.3 550 54.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.0e-155 552.7 550 54.4
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.3e-145 520.8 411 64.0
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 2.2e-145 520.0 418 62.7
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 2.7e-132 476.5 423 56.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.9e-127 458.8 495 50.3
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.6e-124 449.5 556 46.9
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-123 447.6 356 63.2
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 2.4e-120 436.8 616 40.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.5e-117 426.8 498 49.4
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-115 420.6 465 50.1
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 8.3e-113 411.8 319 65.2
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.4e-112 409.1 541 47.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 8.9e-107 391.7 424 54.0
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 7.5e-106 388.7 353 56.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.2e-98 364.8 501 39.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 9.2e-96 355.1 496 40.7
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 8.6e-94 348.6 517 39.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.5e-93 347.1 319 56.7
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.1e-92 344.0 506 42.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.1e-92 344.0 506 42.5
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 6.2e-92 342.4 423 48.0
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.1e-88 331.6 264 62.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 5.6e-85 319.3 347 52.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.1e-80 305.1 486 37.0
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.4e-65 252.7 273 49.8
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.0e-58 231.1 204 59.8
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-57 227.6 210 57.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.7e-54 216.1 167 59.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.9e-41 174.1 113 78.8
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.7e-39 167.5 169 58.6
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 4.6e-39 166.8 594 26.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-38 164.9 123 66.7
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 9.1e-35 152.5 205 46.3
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 4.2e-32 143.7 113 63.7
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.5e-32 143.3 530 27.5
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 9.4e-32 142.5 454 30.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-30 137.5 105 64.8
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 2.8e-28 131.0 115 57.4
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-27 128.3 91 65.9
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.4e-27 127.9 90 73.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 9.1e-27 125.9 97 66.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.1e-27 125.9 103 61.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.2e-25 121.3 497 25.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.2e-24 116.3 88 68.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.8e-17 94.0 162 40.7
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.2e-14 83.6 95 41.1
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.3e-12 79.0 122 41.0
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.0e-10 71.6 500 23.6
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-09 69.3 83 49.4
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 6.1e-07 60.1 45 64.4


User provided reference genes

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